barSeed - Barley Seed Development Database

Probe CUST_2716_PI390587928

Source Contig U35_14211

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2716_PI390587928	Hv_44K_v2	ACTAGTCGGTGATCTTGCGGAAGCAAGACGAGAAATAATCACTGCAAATTTTCTGCCAAA	3304	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75846.5	3497	2e-23	3300 - 3357	100	58 / 58	plus	ABC00002 ABC00268 ABC00680 ABC37456
JLOC1	JLOC1_50591.1	3489	1e-23	3223 - 3280	100	58 / 58	plus
Harvest21	ABC00680	3411	3e-25	3264 - 3323	100	60 / 60	plus	ABC00680
Harvest35	U35_38617	474	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_14211	3451	3e-25	3305 - 3364	100	60 / 60	plus

Contig Sequence (3451 bp)

>U35_14211 3451 Hv_44K_v2
ATCGCCTCCGGTTTCTCTCCTCTCCTCCGCCCCCCCACCCACCCACCACCACTCCCCTTC
TCCGGAGCGGAGGAGAGAGCGGCAGCAGCGCGGCCTCCCCGCGTTGTTGCGTGGCAGCGC
TGGGCCTCCGGGTTCGCCTGTAGACTCCGCCCGCTCCCCTCCCGTGCTGGTTCCGCGCCC
GACCGCCCCCCGCCGTCAGCCATGGGCGGCCTCGAGGAGATCAGGAACGAGGCCGTCGAT
CTGGAGAACATCCCCATCGAGGAGGTGTTCGAGCAGCTGAAGTGCACGCGCCAGGGGCTC
ACCTCCGATGAGGGGGCACAGCGTGTTGAAATCTTCGGCCTCAACAAGCTCGAAGAGAAG
AAGGAGAGCAAAGTCCTCAAGTTCCTGGGATTCATGTGGAACCCGCTGTCCTGGGTCATG
GAGATGGCCGCCATCATGGCCATTGCACTGGCCAACGGTGGTGGGAAGCCTCCGGATTGG
CAGGATTTTGTTGGTATCATCGTTCTCCTGGTCATCAACTCCACCATCTCCTTCATCGAA
GAGAACAACGCCGGCAACGCCGCTGCTGCTCTCATGGCCAACCTTGCACCCAAGACAAAG
GTCCTCAGGGATGGTCGATGGGGCGAGCAGGAGGCATCAATCCTGGTTCCTGGTGACATT
GTCAGCATCAAGCTTGGTGACATCGTCCCTGCTGATGCTCGTCTCCTTGAGGGTGATCCT
TTGAAGATTGATCAGTCTGGGCTTACCGGAGAGTCTCTCCCAGTGACCAAGAACCCTGGG
GATGAGGTCTTTTCTGGATCAACCTGCAAGCAGGGTGAGATTGAGGCTGTGGTCATTGCC
ACAGGAGTACACACTTTCTTTGGCAAGGCTGCTCATCTCGTTGACAGCACCAACCAAGTC
GGGCACTTCCAGCAGGTCCTCACTGCAATTGGAAACTTCTGTATCATCTCGATCGCGGTG
GGAATTGTCATTGAGATCATCGTCATGTTCCCGATCCAGCGCCGCAAGTACCGTGCCGGT
ATTGAGAACCTGTTGGTCCTCTTGATCGGTGGTATCCCGATTGCCATGCCTACAGTTTTG
TCGGTCACCATGGCCATTGGTTCTCACAAGTTGTCCCAGCAGGGTGCTATCACCAAGAGG
ATGACTGCCATTGAAGAGTTGGCTGGCATGGATGTGCTTTGCAGTGATAAGACTGGCACA
CTCACCCTTAACAAGCTCAGTGTTGACAAGAACCTGGTTGAGGTGTTTGCGAAGGGTGTC
GACAAAGAACATGTGTTGTTGTTGGCTGCAAGGGCATCGAGGGTTGAAAACCAGGATGCC
ATTGATGCTTGCATGGTTGGTATGCTTGCTGATCCGAAGGAGGCAAGAGCTGGCATCAGG
GAAGTGCACTTCTTGCCCTTCAACCCTACTGACAAGAGGACTGCTCTGACTTACATTGAT
GCTGAGGGTAACTGGCACCGTGCCAGCAAGGGTGCTCCTGAGCAGATCATTACCCTGTGC
AACTGCAAGGAGGATGTGAAGAGGAAGGTGCACTCTGTGATTGAGAAGTACGCTGAGCGT
GGGCTTCGTTCGCTTGCTGTTGCAAGACAGGAAGTACCTGAGAAATCCAAGGATTCTGCT
GGTGGACCATGGCAATTCATTGGTCTGTTGCCCCTGTTTGATCCCCCAAGGCATGACAGT
GCCGAGACCATCCGCAAGGCACTTGTTCTTGGTGTCAACGTTAAGATGATCACAGGTGAC
CAACTTGCTATTGGAAAGGAGACGGGTAGGAGACTTGGGATGGGCACAAACATGTATCCT
TCTTCTGCATTGCTTGGCCAAAGCAAGGATGGTTCACTTGAGTCACTCCCCGTCGATGAG
CTGATTGAGAAGGCTGATGGATTTGCCGGGGTCTTCCCTGAGCACAAGTATGAGATCGTC
AAGAGGCTGCAAGAGAAGAAGCACATTGTTGGTATGACTGGAGATGGTGTCAATGACGCT
CCTGCTCTTAAGAAGGCCGACATTGGTATTGCTGTTGATGATGCTACAGATGCTGCTCGA
AGTGCTTCCGACATCGTGCTTACCGAGCCAGGTCTTAGTGTCATTATCAGTGCTGTCCTG
ACCAGCAGATGCATTTTCCAAAGGATGAAGAACTACACAATCTACGCAGTTTCCATCACC
ATCCGTATTGTGCTTGGCTTTTTGCTTATTGCCTTGATCTGGAAATTTGATTTCGCTCCC
TTCATGGTCCTTATCATTGCCATTCTCAATGATGGCACTATCATGACAATATCCAAGGAC
AGAGTTAAGCCATCTCCCTTACCCGACAGCTGGAAGCTCAATGAAATCTTCGCCACTGGT
GTTGTGCTCGGAACCTACCTTGCTCTGATGACAGTGGTCTTCTTCTGGATCATCCACAGG
ACCGACTTCTTCACAAACAAATTCGGTGTCAGGTCAATCAGGGAAAATGAAACTGAGAAG
ATGTCTGCACTGTACCTCCAAGTCAGTATTGTGAGCCAGGCTCTTATCTTTGTGACTCGT
TCTCGCAGCTGGTCCTTTGTTGAGCGCCCTGGTTTCCTCTTGGTTATCGCCTTCCTTCTC
GCGCAATTGGTTGCGACACTCATTGCTGTGTATGCCAACTGGGGATTTGCAAGGATCAGT
GGAATCGGGTGGGGCTGGGCTGGTGTTATCTGGCTCTTCAGCATTGTGTTCTACTTCCCA
CTTGACATTTTCAAGTTCTTCATCCGATTTGTGCTGAGTGGCAGGGCCTGGGACAACCTC
CTGCAGAACAAGACTGCTTTCACCACCAAAGAGAACTACGGCAAAGGTGAGAGGGAGGCA
CAGTGGGCTACCGCACAGAGAACACTCCATGGCCTTCAAGCACCTGAGCCGGCTTCCCAC
ACACTCTTCAACGACAAGAGCAGCTACCGTGAGCTTTCTGAGATCGCTGAGCAAGCCAAG
AGAAGAGCTGAGATTGCAAGGTTGAGGGAGCTCAACACACTCAAGGGGCACGTTGAGTCC
GTGGTGAAGCTCAAGGGCCTTGACATCGACACCATCAACCAAAACTACACCGTGTGAGGA
ATTTGGGCATTGGACCAAACAACATGACATCCGTATTGGAGCGAGATTGGAATGGAGCTC
CGCTTTAAGATTTTTCCGGTGCATGAATGAAAGAAACATGGCTGATCTGACCAGCCCCTA
GTTGTAAAGTGCTACCAAATATATGGTTTCGGTTGTCCCGTCTTCTAGAGAGGTTTTAAT
GTTCTAGTGGAGTTATACCGTGTTTGGAGCACGGCGTGGTGTAATCGTTTTACCCTTTCC
CCTAACTAGTCGGTGATCTTGCGGAAGCAAGACGAGAAATAATCACTGCAAATTTTCTGC
CAAAAAAAAAAAAAAAAATGGGTTTTATACAAAAGACAATTCTCGCCAATATATATATCA
TAACTTTTCTGCCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14211 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g56160.1	952	protein\|plasma membrane ATPase, putative, expressed
Brachypodium v1_2	Bradi5g24690.1	952
Arabidopsis v10	AT2G18960.1	949	\| Symbols: AHA1, PMA, OST2, HA1 \| H(+)-ATPase 1 \| chr2:8221858-8227268 FORWARD LENGTH=949