- Probe CUST_27166_PI390587928
- Source Contig U35_33286
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27166_PI390587928 | Hv_44K_v2 | TCTTGGTGATAACAGCTCTCCTGTAAATACCAACAAACTACTCACCTTACTGATAAAAAA | 49 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.281 | 0.409 | 0.788 | 1.918 | 1.454 | 1.998 |
| Raw | 126.690 | 297.075 | 494.309 | 1875.594 | 501.863 | 752.004 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52431.1 | 358 | 2e-24 | 32 - 91 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_33597.1 | 1209 | 8e-25 | 974 - 1033 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_33286 | 260 | 3e-25 | 50 - 109 | 100 | 60 / 60 | minus |
Contig Sequence (260 bp)
>U35_33286 260 Hv_44K_v2 TATAGAGCAACTAGTAGGTTTGGATCGGTAAGGTGAGCAGCTTGTTTTTTTTTTTATCAG TAAGGTGAGTAGTTTGTTGGTATTTACAGGAGAGCTGTTATCACCAAGAACTGATTTGTA ACCCCTCAATTGGCGAACCGGTTTCTCCTTCTTTTCTACTCCCTCCGTAAACTAATATAA GAGCATTTAGAACACTATTTTAATAATCTAAACGCTTTAATATTAGTTGACAGAGGGAGA ATTTCCGGATGCACCGCTGC
Homology of Contig U35_33286 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |