- Probe CUST_27164_PI390587928
- Source Contig U35_45263
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27164_PI390587928 | Hv_44K_v2 | GGTTTTTGTATTAAGGAAGCGCTTCTGTACTTATTTTCCCGGTAATAAAAGGATTCAGAA | 19 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 7.037 | 6.346 | 0.987 | 0.492 | 0.942 | 0.839 |
| Raw | 52.461 | 78.256 | 10.017 | 5.531 | 3.365 | 3.102 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_47452.1 | 1106 | 2e-21 | 927 - 986 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC43918 | 301 | 3e-25 | 20 - 79 | 100 | 60 / 60 | minus | ABC43918 |
| Harvest35 | U35_45263 | 301 | 3e-25 | 20 - 79 | 100 | 60 / 60 | minus |
Contig Sequence (301 bp)
>U35_45263 301 Hv_44K_v2 TTTTTTTTTTTTTTTTTGATTCTGAATCCTTTTATTACCGGGAAAATAAGTACAGAAGCG CTTCCTTAATACAAAAACCTGCAGTATTGCAACCGTATGAACACCAGACATTTTTACAGA AGTAGATTAACTCTACGCAAGATCATCGGTGGCGGGGCTAGAATCAAACGCGGGAATTGA CACTCGGTCGATGCTGAATGCGCCATACCCACGGGCGCGCATAAACAAGCAGAGGCCGTT GAGATCAACCGGAGGAGCCCTGGAGCCTGGACACCAAACTGGATGCGGCGAACGCGGCGG A
Homology of Contig U35_45263 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |