- Probe CUST_27158_PI390587928
- Source Contig U35_33294
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_27158_PI390587928 | Hv_44K_v2 | ATCAATTGCTTCATTTGATCAGAAGATTTCCCGAGGGTCTTCCTGGGAGTCCATGCTTGA | 193 | GeneList: orange MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.848 | 0.999 | 1.562 | 1.933 | 0.931 | 0.803 |
Raw | 315.088 | 573.729 | 790.211 | 1572.087 | 262.860 | 247.305 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
Harvest35 | U35_33294 | 331 | 3e-25 | 194 - 253 | 100 | 60 / 60 | plus |
Contig Sequence (331 bp)
>U35_33294 331 Hv_44K_v2 TCACAGATCAAATTAGTTATTGAACTGCTTTACAAGACAAGACTTGCTTATACAGCAGAG CAAATAAATGAAGCAACATATGTTGCGATTAATAGTAACAAGGCAGTCTTTGATAGCCTG ACGAACAATCCCAAAGTACAATTTGATGGGAAGCGTTTCTCTTACAAGTCCAAGCATGAT TTGAAGGGGAAAGATCAATTGCTTCATTTGATCAGAAGATTTCCCGAGGGTCTTCCTGGG AGTCCATGCTTGATAGCCACCAGACGTCACCTGAGGCTTTGAGAGCCTGTAGATCATCCA ATACAGTTGGATATGAATCCTTGACCTCCAC
Homology of Contig U35_33294 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |