barSeed - Barley Seed Development Database

Probe CUST_2714_PI390587928

Source Contig U35_14213

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2714_PI390587928	Hv_44K_v2	GTGCTTGCAGTTTTTCATGTAACTAGGGTAAAACCCAACAATAATGCAAAACGGAAAGCT	1675	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.254	1.704	3.075	4.611
Raw	22.583	35.886	1749.271	16445.853	11101.983	18073.933

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13434.5	2472	2e-24	2046 - 2105	100	60 / 60	minus	ABC01278 ABC01281 ABC43458
MLOC	MLOC_13434.4	3672	2e-24	3246 - 3305	100	60 / 60	minus	ABC01278 ABC01281 ABC43458
JLOC1	JLOC1_9094.3	1410	8e-25	984 - 1043	100	60 / 60	minus
JLOC1	JLOC1_9095.2	2603	8e-25	368 - 427	100	60 / 60	plus
JLOC1	JLOC1_9095.1	2607	8e-25	368 - 427	100	60 / 60	plus
JLOC1	JLOC1_9094.2	1846	8e-25	1420 - 1479	100	60 / 60	minus
JLOC1	JLOC1_9094.1	1925	8e-25	1499 - 1558	100	60 / 60	minus
Harvest21	ABC01284	2742	3e-25	2632 - 2691	100	60 / 60	plus
Harvest21	ABC01281	2660	3e-25	2359 - 2418	100	60 / 60	plus	ABC01281
Harvest21	ABC01280	369	3e-25	301 - 360	100	60 / 60	plus
Harvest21	ABC01273	1735	3e-25	1676 - 1735	100	60 / 60	plus
Harvest21	ABC43458	333	8e-21	10 - 67	97	57 / 59	minus	ABC43458
Harvest35	U35_14221	2694	3e-25	2626 - 2685	100	60 / 60	plus
Harvest35	U35_14219	2471	3e-25	2359 - 2418	100	60 / 60	plus
Harvest35	U35_14213	1735	3e-25	1676 - 1735	100	60 / 60	plus

Contig Sequence (1735 bp)

>U35_14213 1735 Hv_44K_v2
GTAACTTCTTCCCAGCAGCCAGGACAAGGGCAGCAAGGGTCCTACCCAGGTTCAACTTTC
CCGCAGCAGCCAGGACAAGGACAACAACCAGGACAGAGGCAGCCATGGTCCTATCCAAGT
GCAACTTTCCCACAACAGCCAGGGCAAGGGCAAGGGCAACAAGGGTACTACCCAGGCGCA
ACTTCCCTGCTGCAGCCAGGACAAGGGCAACAAGGGCCCTACCAGAGTGCAACTTCTCCA
CAACAGTCGGGACAAGGGCAACAAGGGTACCCAAGTACAACTTCTCCACAACAATCGGGG
CAAGGGCAACAGCTGGGACAAGGGCAACAACCAGGACAAGGGCAACAAGGGTACCCAAGT
GCAACTTTTCCACAACAGCCAGGACAATGGCAACAAGGGTCCTACCCAAGTACAACTTCT
CCGCAGCAGTCAGGACAAGGGCAACAAGGGTACAACCCAAGTGGAACTTCTACGCAGCAG
CCGGGACAAGTGCAACAGTTGGGACAAGGGCAACAAGGGTACTACCCAATTGCAACTTCT
CCGCAGCAGCCAGGACAAGGGCAACAGCTAGGACAAGGGCAACAACCAGGACATGGGCAA
CAGCTAGTGCAAGGGCAACAACAAGGACAAGGGCAAAAAGGATACTACCCAAGTGCAATT
TCTCCGCAGCAGTCAGGACAAGGACAACAAGGATACCAGCCTAGTGGAGCTTCTTCACAG
GGGTCGGTGCAAGGGGCGTGCCAGCACAGCACATCTTCTCCGCAGCAGCAAGCACAAGGG
TGCCAAGCTTCTTCACCAAAGCAAGGGCTAGGGTCGTTGTACTACCCGAGTGGAGCTTAT
ACACAACAGAAACCAGGGCAAGGGTACAACCCAGGTGGAACTTCTCCGCTGCACCAGCAA
GGGGGAGGGTTCGGCGGCGGGTTAACGACGGAGCAACCGCAGGGAGGAAAGCAGCCATTC
CATTGCCAGCAAACCACTGTCTCCCCTCACCAGGGTCAGCAAACCACTGTCTCCCCTCAT
CAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCAC
CAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCAT
CCGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCAT
CCGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCAT
CCGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCCCTCAT
CAGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCCCTCAC
CAGGGTCAGCAGCCCGGCGAGCAGCCTTGCGGTTTCCCTGGCCAGCAAACCACCGTGTCT
CTGCACCATGGTCAGCAGTCCAACGAGTTGTACTACGGCAGCCCATACCATGTTAGCGTG
GAGCAGCCGTCGGCCAGCCTAAAGGTAGCAAAGGCGCAGCAGCTCGCGGCACAGCTGCCG
GCAATGTGTCGGCTGGAGGGCGGCGGCGGCCTGTTGGCCAGCCAGTAGTAGAACTCTGGC
AGCTCGCATGGTGCTTGGGCATGCATGCACCTTAGCTATACAATAAACGTGACGTGTGCT
TGCAGTTTTTCATGTAACTAGGGTAAAACCCAACAATAATGCAAAACGGAAAGCT

Homology of Contig U35_14213 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None