barSeed - Barley Seed Development Database

Probe CUST_27142_PI390587928

Source Contig U35_32437

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27142_PI390587928	Hv_44K_v2	TTGGGTTTCCCCCGATTCATTCCATCCTGCTGTTCCTGACGGCCAAGTTGACGGCTGCTT	146	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367199	3523	2e-24	155 - 214	100	60 / 60	plus	ABC51588
Harvest35	U35_32437	483	3e-25	147 - 206	100	60 / 60	plus

Contig Sequence (483 bp)

>U35_32437 483 Hv_44K_v2
AGTGTTAGCACCGATCTGAAGTTCTCAACCTAATCCTTAACTGCCCTCCCAACACAAAAC
TCCTCCTCCTCCTCCTCCTCCTCCCCTCCCCGTCCGTCCCTCTGACACCCCCGCCTTCCT
CCCTGCCTTCATCGACGGTTTCGTCCTTGGGTTTCCCCCGATTCATTCCATCCTGCTGTT
CCTGACGGCCAAGTTGACGGCTGCTTCTGCTGCATCGGCCAATCGATCCTGGTTCATCCT
CTGCCTTGGGTCGCCGTGGATCGGCCATGTTCGTCAAGAAGCTCGTGGAGAAGGCCTCCA
AGAAGCAACACAGCGGCGGCATCGGCGGGCTGCGCGCCGAGGACGTGAGCCCGCGGCTGG
CCTTCCACTACGGCGTCCCCGCCGACGCCGCCCTCCTCGCCTACGAACCCCTCCTCCACG
TCCTCGCCGTCGGCACCAGGAATGGGCAGATCAAGCTGTTCGGCCGCGACACACGCAGGC
GCT

Homology of Contig U35_32437 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None