barSeed - Barley Seed Development Database

Probe CUST_27140_PI390587928

Source Contig U35_32438

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27140_PI390587928	Hv_44K_v2	GTTGTTAAGCATGAACTCTGATGCTGCAAATGTAATCACCAATGGCCCATTATGTCGCTG	387	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66657.3	1975	7e-23	1310 - 1370	98	60 / 61	plus	None
MLOC	MLOC_66657.1	2700	7e-23	2029 - 2089	98	60 / 61	plus	None
MLOC	MLOC_66657.2	2558	7e-23	1887 - 1947	98	60 / 61	plus	None
JLOC1	JLOC1_43954.1	4790	4e-23	1943 - 2003	98	60 / 61	plus
Harvest35	U35_32438	450	3e-25	388 - 447	100	60 / 60	plus

Contig Sequence (450 bp)

>U35_32438 450 Hv_44K_v2
GGATGAGTGTTCTATTAAGCCTGATACCATGTTGAAAGCTGGGCAGAACTGCTCAGAGAA
TCTTGATGTGGTGGCCACTCCACCTAGTTTCTGTATGAGGAAAGCACGTCCAAAGATAAC
ATCTGGTGCCGCAACGGGTTCTGAGCCGTCTAACATCTTTGAAGCATTCTGGCATCCAAC
AGATCTTGCAGTTAAACCAGTTATGCCCAGTAAAAAGGGAGATAAAGCTACCGAGGCTGT
CCCTGTACTTCCTTTTGAAGCTCTTCCTGCTGCTGATTACATCAGGTTACCACGAGAACA
GATGAATGCATTCAATAGCCAGATAATTCAGAGTTTGAATGGGTCTTTTCAGGTTTCAGA
GAAACAGAATATCATCAGATACCTGGAGTTGTTAAGCATGAACTCTGATGCTGCAAATGT
AATCACCAATGGCCCATTATGTCGCTGCTT

Homology of Contig U35_32438 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g15480.1	1347	1e-71	protein\|EMB3013, putative, expressed
Brachypodium v1_2	Bradi2g09370.1	1350	8e-81
Arabidopsis v10	None