- Probe CUST_2713_PI390587928
- Source Contig U35_14214
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2713_PI390587928 | Hv_44K_v2 | CAAAAAGGATACTACCCAAGTGCAATTTCTCCGCAGCAGTCAGGACAAGGACAACAAGGA | 473 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.023 | 0.020 | 0.398 | 2.503 | 6.894 | 6.917 |
| Raw | 7.636 | 7.248 | 199.945 | 1555.907 | 1827.180 | 2031.460 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373042 | 2382 | 2e-24 | 1333 - 1392 | 100 | 60 / 60 | plus | ABC01278 ABC01281 ABC43458 |
| MLOC | MLOC_43972.1 | 2179 | 2e-24 | 1719 - 1778 | 100 | 60 / 60 | plus | ABC01278 ABC01281 |
| JLOC1 | JLOC1_28456.2 | 1550 | 8e-25 | 1115 - 1174 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28456.1 | 1890 | 8e-25 | 1430 - 1489 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC45238 | 194 | 3e-25 | 131 - 190 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01284 | 2742 | 3e-25 | 1710 - 1769 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01281 | 2660 | 3e-25 | 1317 - 1376 | 100 | 60 / 60 | plus | ABC01281 |
| Harvest21 | ABC01276 | 567 | 3e-25 | 354 - 413 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01273 | 1735 | 3e-25 | 634 - 693 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01272 | 1071 | 3e-25 | 268 - 327 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01275 | 614 | 1e-23 | 474 - 533 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01274 | 592 | 6e-22 | 331 - 390 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14221 | 2694 | 3e-25 | 1704 - 1763 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14219 | 2471 | 3e-25 | 1317 - 1376 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14215 | 569 | 3e-25 | 354 - 413 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14214 | 535 | 3e-25 | 474 - 533 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14213 | 1735 | 3e-25 | 634 - 693 | 100 | 60 / 60 | plus |
Contig Sequence (535 bp)
>U35_14214 535 Hv_44K_v2 AACAACCAGGACAGAGGCAGCCATGGTCCTATCCAAGTGCAACTTTCCCACAACAGCCAG GGCAAGGGCAAGGGCAACAAGGGTACTACCCAGGCGCAACTTCCCTGCTGCAGCCAGGAC AAGGGCAACAAGGGCCCTACCAGAGTGCAACTTCTCCACAGCAGCCAGGACAAGGACAGG GACAACAAGAGCCCTATCCAATTGCAACTTCCCCGCATCAGCCAGGACAATGGCAACAAC CAGGACAAGGGCAACAAGGGTACTACCCAAGTGTAACTTCTCCACAACAGTCGGGACAAG GGCAACAAGGGTACCCAAGTACAACTTCTCCACAACAATCGGGGCAAGGGCAACAGCTGG GACAAGGGCAACAACCAGGACATGGGCAACAGCTAGTGCAAGGGCAACAACAAGGACAAG GGCAACAAGGACACTACCCAAGTATGACTTCTCCGCACCAAACAGGACAAGGGCAAAAAG GATACTACCCAAGTGCAATTTCTCCGCAGCAGTCAGGACAAGGACAACAAGGATA
Homology of Contig U35_14214 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |