- Probe CUST_2712_PI390587928
- Source Contig U35_14215
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2712_PI390587928 | Hv_44K_v2 | TCTTCACCAAAGCAAGGGCTAGGGTCGTTGTACTACCCGAGTGGAGCTTATACACAACAG | 509 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.013 | 0.012 | 0.263 | 1.942 | 3.509 | 4.088 |
| Raw | 4.501 | 3.699 | 158.805 | 1644.702 | 1127.441 | 1436.278 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373042 | 2382 | 2e-24 | 1489 - 1548 | 100 | 60 / 60 | plus | ABC01278 ABC01281 ABC43458 |
| MLOC | MLOC_43972.1 | 2179 | 2e-24 | 1875 - 1934 | 100 | 60 / 60 | plus | ABC01278 ABC01281 |
| JLOC1 | JLOC1_28456.2 | 1550 | 8e-25 | 1271 - 1330 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_28456.1 | 1890 | 8e-25 | 1586 - 1645 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01284 | 2742 | 3e-25 | 1866 - 1925 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01281 | 2660 | 3e-25 | 1473 - 1532 | 100 | 60 / 60 | plus | ABC01281 |
| Harvest21 | ABC01274 | 592 | 3e-25 | 487 - 546 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01273 | 1735 | 3e-25 | 790 - 849 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01272 | 1071 | 3e-25 | 424 - 483 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01276 | 567 | 4e-24 | 510 - 567 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC44202 | 556 | 6e-22 | 325 - 384 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14221 | 2694 | 3e-25 | 1860 - 1919 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14219 | 2471 | 3e-25 | 1473 - 1532 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14215 | 569 | 3e-25 | 510 - 569 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14213 | 1735 | 3e-25 | 790 - 849 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14217 | 972 | 6e-22 | 325 - 384 | 97 | 58 / 60 | plus |
Contig Sequence (569 bp)
>U35_14215 569 Hv_44K_v2 AGCAAGGGTCCTACCCAGGTTCAACTTTCCCGCAGCAGCCAGGACAAGGACAACAACCAG GACAGAGGCAGCCATGGTCCTATCCAAGTGCAACTTTCCCACAACAGCCAGGGCAAGGGC AAGGGCAACAAGGGTACTACCCAGGCGCAACTTCCCTGCTGCAGCCAGGACAAGGGCAAC AAGGGCCCTACCAGAGTGCAACTTCTCCACAGCAGCCAGGACAAGGACAGGGACAACAAG AGCCCTATCCAATTGCAACTTCCCCGCATCAGCCAGGACAATGGCAACAACCAGGACAAG GGCAACAAGGACACTACCCAAGTATGACTTCTCCGCACCAAACAGGACAAGGGCAAAAAG GATACTACCCAAGTGCAATTTCTCCGCAGCAGTCAGGACAAGGACAACAAGGATACCAGC CTAGTGGAGCTTCTTCACAGGGGTCGGTGCAAGGGGCGTGCCAGCACAGCACATCTTCTC CGCAGCAGCAAGCACAAGGGTGCCAAGCTTCTTCACCAAAGCAAGGGCTAGGGTCGTTGT ACTACCCGAGTGGAGCTTATACACAACAG
Homology of Contig U35_14215 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |