barSeed - Barley Seed Development Database

Probe CUST_27128_PI390587928

Source Contig U35_20460

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27128_PI390587928	Hv_44K_v2	GTGACTCCATGTTACACAAAGAATGTTGGTGGCGTATTTGTAAGTGTTTTCAATATGTTA	1215	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.774	2.528	1.640	0.860	0.401	0.512
Raw	118.581	265.913	145.175	123.647	19.046	27.363

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32733.1	3609	2e-21	3385 - 3444	97	59 / 61	plus
Harvest21	ABC16353	689	3e-25	1 - 60	100	60 / 60	minus	ABC16353
Harvest35	U35_20460	1275	3e-25	1216 - 1275	100	60 / 60	plus

Contig Sequence (1275 bp)

>U35_20460 1275 Hv_44K_v2
TGCAGGAATTCGGTCACGAGGCCACAACAAGCAATTCAGCGTTGGGGGCTCCTAGAGGCC
GAATGTATTCATCTAGAGGAAGCAGTCAAGCAGCTGAAACTAATATCGTAACCAGCGAGG
AGGATGTTTTATCTGTTCTAATCGAAGAGCATGATCTATTTTTGAGTTCAACACGATCGC
GACTGACAAAATTGCAGATTCTGCATCAAATGTGGCAAAGAAATGACATCAGGGGTGTTT
TCTCAGCGCTGGCGAAGATGTCTGATCATGCTGTATGTGCTGATATGGCAAGTGTTCTGA
TGGAGAAAAGCGAAGCCATCACACTAGATTTATGTACCAGTATCCTGCCTGTCCTTGCTG
ACCTTCTGGATAGTACAACTGACAGGCATGTAGCTGTATCACTGGAACTGGTGGTGAAGC
TTGTCAGGACTTTTGGGCCTGTAATACATTCAACAGTATCAGTTGGTCCATCTTCTGTTG
GTGTAGATCTTGAAGCAGAACAAAGGCGGGAGAGGTGCAACTTATGCTTCATAGAACTGG
AGAAAGTTAAAAATAAGCTTCCTTCCCTTATGAGAAGAAAAGGGGCAGCTTCAAACACAG
CGCAGGAGCTCAGTCTCGTGTTCCAGGAAATTATGTCGTAGACTGACCACACATTCTCAA
TACAAACACACAATTGAATGGGAGACGCTTTCTTTCCCTCTGGTCTCATGATGGAGCGCT
GCTTGTTTTCGCGCTACCGTGAAGCCCTGGGGTCACGCCCAAGGTAGTAACCTTTTGTTG
CTACCGACCGATCCATGCCCTTTGTACAACACTAACCCTTATTGATTGGCATCCTTGCCA
TTTGGAAAGAGAAGCCACCAAAGACGAGCGCGGGGCGGTGTTCCTCGTGTCATGATTGTT
TCACTGGCTGGCTTCAGATGGTTTTCGTTTGGTCTCGACCTCGAAGTCAGAAGGCCTTTG
CCCGTGCCTGTAAATGCTGTAGCCTGTCCCGCTCTTCTTGTGTATCAGCTTGCTTTTTGG
TGTGGTAGTGTGCTGTTGGGCTTGTATGATGTCTGGTCGATTCAGTGACAAGATTGACGA
GTGAGTGAGTGTTGATCTGATACATGTACAATTACACACCATTTTTTGTTGAAGAGTTTC
GACACATTATCTTTTAAAAAAAAAAAAAAAATTGTCGTGTGCTGTGTCTCCCGGAAGTGG
GATCGATTCCACTCAGTGACTCCATGTTACACAAAGAATGTTGGTGGCGTATTTGTAAGT
GTTTTCAATATGTTA

Homology of Contig U35_20460 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58130.1	939	2e-93	protein\|katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed
Brachypodium v1_2	Bradi5g26190.1	923	1e-98
Arabidopsis v10	None