- Probe CUST_2711_PI390587928
- Source Contig U35_14216
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2711_PI390587928 | Hv_44K_v2 | TGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCAC | 142 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.287 | 1.720 | 3.645 | 4.053 |
| Raw | 32.189 | 40.782 | 2589.887 | 21743.867 | 17347.593 | 21060.567 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373042 | 2382 | 3e-22 | 2008 - 2066 | 98 | 58 / 59 | plus | ABC01278 ABC01281 ABC43458 |
| MLOC | MLOC_43972.1 | 2179 | 7e-23 | 2063 - 2122 | 98 | 59 / 60 | plus | ABC01278 ABC01281 |
| MLOC | MLOC_13434.5 | 2472 | 3e-22 | 2414 - 2472 | 98 | 58 / 59 | minus | ABC01278 ABC01281 ABC43458 |
| MLOC | MLOC_13434.4 | 3672 | 3e-22 | 3614 - 3672 | 98 | 58 / 59 | minus | ABC01278 ABC01281 ABC43458 |
| JLOC1 | JLOC1_28456.2 | 1550 | 4e-23 | 1459 - 1518 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_28456.1 | 1890 | 4e-23 | 1774 - 1833 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_9094.3 | 1410 | 1e-22 | 1352 - 1410 | 98 | 58 / 59 | minus | |
| JLOC1 | JLOC1_9095.2 | 2603 | 1e-22 | 1 - 59 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_9095.1 | 2607 | 1e-22 | 1 - 59 | 98 | 58 / 59 | plus | |
| JLOC1 | JLOC1_9094.2 | 1846 | 1e-22 | 1788 - 1846 | 98 | 58 / 59 | minus | |
| JLOC1 | JLOC1_9094.1 | 1925 | 1e-22 | 1867 - 1925 | 98 | 58 / 59 | minus | |
| Harvest21 | ABC44822 | 378 | 6e-22 | 315 - 374 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01284 | 2742 | 6e-22 | 2204 - 2263 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01283 | 582 | 6e-22 | 348 - 407 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01281 | 2660 | 2e-21 | 1782 - 1840 | 97 | 57 / 59 | plus | ABC01281 |
| Harvest21 | ABC01278 | 753 | 2e-21 | 606 - 664 | 97 | 57 / 59 | minus | ABC01278 |
| Harvest21 | ABC01277 | 866 | 2e-21 | 240 - 298 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC01273 | 1735 | 6e-22 | 1248 - 1307 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC01272 | 1071 | 2e-21 | 673 - 731 | 97 | 57 / 59 | plus | |
| Harvest21 | ABC44196 | 244 | 5e-23 | 61 - 119 | 98 | 58 / 59 | plus | |
| Harvest21 | ABC52926 | 369 | 1e-23 | 126 - 185 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC01282 | 396 | 6e-22 | 34 - 93 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC43872 | 114 | 6e-22 | 57 - 113 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_38427 | 638 | 2e-21 | 90 - 148 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_14221 | 2694 | 2e-21 | 2169 - 2227 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_14220 | 582 | 6e-22 | 348 - 407 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_14219 | 2471 | 2e-21 | 1782 - 1840 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_14217 | 972 | 2e-21 | 574 - 632 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_14216 | 606 | 2e-21 | 234 - 292 | 97 | 57 / 59 | plus | |
| Harvest35 | U35_14213 | 1735 | 6e-22 | 1248 - 1307 | 97 | 58 / 60 | plus |
Contig Sequence (606 bp)
>U35_14216 606 Hv_44K_v2 ACAACCCAGGTGGAACTTCTCCGCTGCACCAGCAAGGGGGAGGGTTCGGCGGCGGGTTAA CGACGGAGCAACCGCAGGGAGGAAAGCAGCCATTCCATTGCCAGCAAACCACTGTCTCCC CTCACCAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCC CTCATCAGGGTCAGCAAACCACGGTCTCCCCTCACCAGGGTCAGCAAACCACCGTCTCCC CTCACCAGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCC CTCATCCGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCC CTCATCCGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCC CTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCC CTCATCAGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCC CTCATCAGGGTCAGCAGCCCGGCGAGCAGCCTTGCGGTTTCCCTGGCCAGCAAACCACCG TGTCTC
Homology of Contig U35_14216 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |