barSeed - Barley Seed Development Database

Probe CUST_27119_PI390587928

Source Contig U35_20469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27119_PI390587928	Hv_44K_v2	CAAGGTTCTCTGGAACAGCTAGATAGAGAGAAGCTATAAAAGTTTATGCTCTTAACCAAA	1038	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17377.1	1408	3e-21	1 - 57	98	56 / 57	minus	ABC16088
JLOC1	JLOC1_11999.1	1353	1e-22	1162 - 1220	98	58 / 59	plus
Harvest21	ABC16088	1111	5e-23	1039 - 1097	98	58 / 59	plus	ABC16088
Harvest35	U35_20469	1112	3e-25	1039 - 1098	100	60 / 60	plus

Contig Sequence (1112 bp)

>U35_20469 1112 Hv_44K_v2
CCTCTTTGCTTTGGCCTGGCCTGGCTTGGCTTCCCACGGAAGACAAGTATCCTTGTCTCT
GGCTCCCCCCATTCTTCCCCACCCCTCTTCTTCACCCTGTGACTCTGAGCAGCAACCTAG
CTGCTGTTTCCGTGCGCTTGACCGTCTGTGCGGCGGTGGAGGCGCGGCGAGAGCGGCGGA
GGCGGAGGAGAGATGAGCGTGACCAAGTTCATCAAGTGCGTCACGGTGGGGGACGGCGCC
GTCGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAGGTTCCCCAGTGATTACATC
CCCACGGTGTTCGACAACTTCAGCGCCAACGTCTCCGTCGACGGCAACATCGTCAACCTC
GGCCTATGGGACACCGCCGGGCAAGAAGACTACAGCCGGCTGAGGCCGCTGAGCTACAGA
GGCGCCGACGTGTTCGTGCTCGCCTTCTCCCTCATCAGCAGCGCCAGCTACGAGAATGTT
CTTAAGAAGTGGATGCCAGAGCTCCGCCGGTTCGCGCCGAATGTCCCCATTGTTCTTGTT
GGGACCAAGCTAGATCTGCGTGACCACAGAGCCTACCTCGCCGACCACCCCGGTGCTTCA
GCAATCACAACTGCACAGGGTGAAGAACTTAGGAAGCAGATCGGCGCCGCGGCTTACATC
GAGTGCAGCTCCAAGACACAGCAGAACGTCAAGGCTGTGTTTGACACCGCCATAAAGGTG
GTCCTCCAGCCGCCGAGGAGAAGGGAGGTGATGTCCGCCAGGAAGAAAACCAGGCGAAGC
TCTGGATGCTCCATCAAGCACTTGATCTGCGGGAGTACGTGCGCTGCTTGAATTAGCACC
ATGGAGGCCTGGACTGACTATGGAGATGAAGCATGGTGTAGTAGCAAGTGGATTTGCTGA
CATAGCAAGGGTTTCTTTCTGGTGCATCTGTTCTGTTTAGCTACTATGTTGCTGTGTTTT
GGTATCTATTTCCAAACCTAGAGCGTCAGGCTCTGGGATCGACTATTAGGATTGGTGTAA
TCTGTAATGTTATGTAAGCAAGGTTCTCTGGAACAGCTAGATAGAGAGAAGCTATAAAAG
TTTATGCTCTTAACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g43820.1	215	5e-136	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi2g19990.1	214	2e-144
Arabidopsis v10	AT4G28950.1	209	1e-123	\| Symbols: ARAC7, ATROP9, ATRAC7, RAC7, ROP9 \| RHO-related protein from plants 9 \| chr4:14278289-14279705 FORWARD LENGTH=209