barSeed - Barley Seed Development Database

Probe CUST_27118_PI390587928

Source Contig U35_32440

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27118_PI390587928	Hv_44K_v2	AATTCCATGAAACATTATCATGCAAAGCAAGGCGTGCGGTCAGGAGTACTTCACAGCCAT	312	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70636.2	3575	2e-24	3512 - 3571	100	60 / 60	minus	None
MLOC	MLOC_70636.3	2934	2e-24	2462 - 2521	100	60 / 60	minus	None
MLOC	MLOC_70636.1	3715	2e-24	3243 - 3302	100	60 / 60	minus	None
JLOC1	JLOC1_46886.2	3580	8e-25	139 - 198	100	60 / 60	plus
JLOC1	JLOC1_46886.1	3754	8e-25	5 - 64	100	60 / 60	plus
Harvest35	U35_32440	466	3e-25	313 - 372	100	60 / 60	plus

Contig Sequence (466 bp)

>U35_32440 466 Hv_44K_v2
AGTCCCCAACGAGAGCAGCGACAGCGACAGTCCATTCGCCGAATTCGTGCGATCCCCGGC
GGAATCTGACGCGACGGCGCGTGGGTCTGCTCGATTTGGGGTTAAACCTGGCCAGGAATC
GGTGGGCGGAGCGAATGACGGTACCGGAGGCGGTGGCACTAGACATACCGGCCGAGGAGG
GTTCGCCGGTGGCCAGGGTGCCGCGGCGGATCAGGAGGAGGCTCCTCCAGGCGAGTGAGT
CAAGCGCCGACGCGCCGGCAACGGCCGAAGAGATCGAGGCCAAGCTCCGCGACGCCCAAC
TCCGGAGGCAGCAATTCCATGAAACATTATCATGCAAAGCAAGGCGTGCGGTCAGGAGTA
CTTCACAGCCATCTCAGGGGGAGGATCCCAAGCAGCGGCGCCTTGAAGTGAAGCTTGTGG
CTGCTAAGCAGAAGAGGTTGAGCCTCTTGGAGAAGAGCAGAATCGT

Homology of Contig U35_32440 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None