barSeed - Barley Seed Development Database

Probe CUST_27115_PI390587928

Source Contig U35_18150

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27115_PI390587928	Hv_44K_v2	AGCAACAAAGGCAGAACTATTCTGCAAGACATTCGAAGAAGCTCATGAGAAACTTGTTTA	304	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364201	636	7e-23	299 - 358	98	59 / 60	plus	ABC09876 ABC52653
MLOC	MLOC_59077.1	1248	7e-23	981 - 1040	98	59 / 60	plus	ABC09876 ABC52653
MLOC	MLOC_59077.2	1037	7e-23	532 - 591	98	59 / 60	plus	ABC09876 ABC52653
JLOC1	JLOC1_38417.1	3501	4e-23	559 - 618	98	59 / 60	plus
JLOC1	JLOC1_38418.1	2861	2e-21	2773 - 2829	98	56 / 57	minus
Harvest21	ABC09876	652	3e-25	302 - 361	100	60 / 60	plus	ABC09876
Harvest21	ABC41121	487	1e-23	287 - 346	98	59 / 60	plus
Harvest35	U35_18150	673	3e-25	305 - 364	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_18150 673 Hv_44K_v2
CGCCGTCTTCTCTGACCCCGAGACCAAAACGCACCGGCGTCGGAGCGGCTGCACGAGGGC
GGGGCCCAACGCCGGCGAGCGGTGGCGGCAGCGTGCTCGCCACCATGGACGAGCAGGAGT
TTCGGCGCATGCTCGATCTCTACCCCGTCGTTCGGTCCCGCGACTACTGCAAGGATGAAT
TGGAATCATCAAGCAAAGGCACCACACAGCAAGAGCAAGCTCAGGAGATAAAAGGAACCA
AAAAGAAGGCTGCAGAAGATCTATTCCTGCGGAAATTGAAGATGGCTGCTGAGAAAAAGG
TTGGAGCAACAAAGGCAGAACTATTCTGCAAGACATTCGAAGAAGCTCATGAGAAACTTG
TTTACAAAGAATTGGATCTGGATGCTGCTCAAAGGTTCCTGAGTGCCTACAAGAGTTGAT
GATGAACTGTTGCTAGATGCCTAAAAGATTTGATTTTTATTCATCTGAAACTGCTGAAGG
TGTGATGACGTTAAGATTTCTGATATTTCCTTTGTGGTTCTCATCTTCTGCGAATCCATG
TAGACAGCCCTGGTCAATCAGCTACATTATTCAGAATCTGATGTTGTGTTATCCTTAACA
TAGACCAAAGAAGAAAATGTATTTTTCTTCCAGCTCTGATAAAAAAAAAAAAAAAAACAG
AGTTAAAAAAAAA

Homology of Contig U35_18150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g19850.1	107	2e-55
Arabidopsis v10	None