- Probe CUST_2710_PI390587928
- Source Contig U35_14217
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2710_PI390587928 | Hv_44K_v2 | TCTCTGCACCATGGTCAGCAGTCCAACGAGTTGTACTACGGCAGCCCATACCATGTTAGC | 912 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.243 | 1.691 | 3.327 | 3.974 |
| Raw | 10.540 | 31.154 | 1087.072 | 10791.493 | 7887.300 | 10205.200 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK373042 | 2382 | 2e-24 | 2137 - 2196 | 100 | 60 / 60 | plus | ABC01278 ABC01281 ABC43458 |
| MLOC | MLOC_13434.5 | 2472 | 2e-24 | 2284 - 2343 | 100 | 60 / 60 | minus | ABC01278 ABC01281 ABC43458 |
| MLOC | MLOC_13434.4 | 3672 | 2e-24 | 3484 - 3543 | 100 | 60 / 60 | minus | ABC01278 ABC01281 ABC43458 |
| JLOC1 | JLOC1_9094.3 | 1410 | 8e-25 | 1222 - 1281 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_9095.2 | 2603 | 8e-25 | 130 - 189 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9095.1 | 2607 | 8e-25 | 130 - 189 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9094.2 | 1846 | 8e-25 | 1658 - 1717 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_9094.1 | 1925 | 8e-25 | 1737 - 1796 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC48347 | 321 | 3e-25 | 257 - 316 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01284 | 2742 | 3e-25 | 2394 - 2453 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01282 | 396 | 3e-25 | 158 - 217 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01281 | 2660 | 3e-25 | 2121 - 2180 | 100 | 60 / 60 | plus | ABC01281 |
| Harvest21 | ABC01280 | 369 | 3e-25 | 63 - 122 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01278 | 753 | 3e-25 | 266 - 325 | 100 | 60 / 60 | minus | ABC01278 |
| Harvest21 | ABC01277 | 866 | 3e-25 | 609 - 668 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01273 | 1735 | 3e-25 | 1438 - 1497 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01272 | 1071 | 3e-25 | 1012 - 1071 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43458 | 333 | 2e-21 | 246 - 301 | 98 | 55 / 56 | minus | ABC43458 |
| Harvest35 | U35_47358 | 321 | 3e-25 | 257 - 316 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_38427 | 638 | 3e-25 | 429 - 488 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14221 | 2694 | 3e-25 | 2388 - 2447 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14219 | 2471 | 3e-25 | 2121 - 2180 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14217 | 972 | 3e-25 | 913 - 972 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14213 | 1735 | 3e-25 | 1438 - 1497 | 100 | 60 / 60 | plus |
Contig Sequence (972 bp)
>U35_14217 972 Hv_44K_v2 CAAGTGTAAGCTTCTCCACAACAGTCGGGACAAGGGCAACAAGGGTACCCAAGTACAACT TCTCCACAACAATCGGGGCAAGGGCAACAGCTGGGACAAGGGCAACAACCAGGACAAGGG CAACAAGGGTACCCAAGTGCAACTTTTCCACAACAGCCAGGACAATGGCAACAAGGGTCC TACCCAAGTACAACTTCTCCGCAGCAGTCAGGACAAGGACAACAAGGATACCAGCCTAGT GGAGCTTCTTCACAGGGGTCGGTGCAAGGGGCGTGCCAGCACAGCACATCTTCTCCGCAG CAGCAAGCACAAGGGTGCCAAGCTTCTTCAATAAAGCAAGGGCTAGGGTCGTTGTACTAC CCGAGTGGAGCTTATACACAACAGAAACCAGGGCAAGGGTACAACCCAGGTGGAACTTCT CCGCTGCACCAGCAAGGGGGAGGGTTCGGCGGCGGGTTAACGACGGAGCAACCGCAGGGA GGAAAGCAGCCATTCCATTGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACC ACTGTCTCCCCTCACCAGGGTCAGCAAACCACCGTCTCCCCTCACCAGGGTCAGCAAACC ACCGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCCGGGTCAGCAAACC ACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCCGGGTCAGCAAACC ACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACC ACCGTCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACC ACCGTCTCCCCTCATCAGGGTCAGCAGCCCGGCGAGCAGCCTTGCGGTTTCCCTGGCCAG CAAACCACCGTGTCTCTGCACCATGGTCAGCAGTCCAACGAGTTGTACTACGGCAGCCCA TACCATGTTAGC
Homology of Contig U35_14217 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |