barSeed - Barley Seed Development Database

Probe CUST_27107_PI390587928

Source Contig U35_18156

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27107_PI390587928	Hv_44K_v2	ATATTGTAGGCGGTAGAGAAATAGTAGTGCTGATTGATCATCATCCCCTGAGACTGGGAC	1876	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.126	0.547	1.760	2.235	0.953	1.125
Raw	231.520	1669.550	4498.170	9002.473	1354.894	1727.982

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66503.1	2354	2e-24	2205 - 2264	100	60 / 60	plus	ABC10196 ABC51843
MLOC	MLOC_66503.2	2355	2e-24	2109 - 2168	100	60 / 60	plus	ABC10196 ABC51843
JLOC1	JLOC1_43829.2	1987	8e-25	1694 - 1753	100	60 / 60	plus
JLOC1	JLOC1_43829.1	2399	8e-25	2106 - 2165	100	60 / 60	plus
Harvest21	ABC10196	1334	3e-25	1084 - 1143	100	60 / 60	plus	ABC10196
Harvest35	U35_18156	2129	3e-25	1877 - 1936	100	60 / 60	plus

Contig Sequence (2129 bp)

>U35_18156 2129 Hv_44K_v2
AATCCGTCCGACATTGATGCGCCGGAGCCGCCTCCCCCTCCACGCCGACGCTGAGCTAGT
CGCCGGAGGTGCCGCAGCAGCTCCAGCCGGCGGCGCGCGGCAGTGAGTGCGTGAGGCGAC
GCGGATAGCGACAGCGGGGGTGGTTGGCACCGCTGCTCCTGCCGCTCCAAGAACCCTAGA
GGAGCAAGCGGGAGGCGGCCGCCAGGGGTTTCTCGCTCCACAGGCTGCTCAAATCTAGAG
ATGCCGACAGCCGAAAGCCTACGTGCAGAGCTGTCATCCAAGACGCCACCCTTTGGCCTG
AGGCTGTGGATAGTGATTGGCATCAGCATCTGGGTGGTAATCTTCTGTATACTAGGTTTC
ATGTGCTTCTGGTCCATATACCGGAGGAAGCCGAAGAAGTCTGTTGATAAGATCCCAGTA
TCTCAAATCCCCGATGTATCTAAGGAGATTGCAGTGGATGAAGTGCGCCAGCATGCTGTT
GTTGAGAACTATCAAGTGCAAGAAAGCCACACGTTGACGGTGCAGGAGAAGCCTCATGAC
AAAGATTCTGGGAAAATGCTGGGACACTTGGTCAGGACAAAGTCGAGTGATGCCGATAAT
TTGAGCCAGTGCAGCTCGGCCTACCAATGCGATAGGGCTGGTAGTGCTTATTCTGGCGAT
GAAGGCAGTTCAGGCAACGCTAGGAGGCAATATCCTCAGTATGCGACCGTCTCCGCATCT
CCTCTTGTTGGTCTCCCGGAATTTTCGCACTTGGGTTGGGGCCATTGGTTCACTCTGAGG
GATTTGGAGCATTCGACGAATCGGTTTTCTAAGGAGAACATCATTGGAGAGGGTGGATAT
GGGGTGGTTTACCGTGGTCGACTCATAAATGGGACTGATGTAGCGATAAAAAAACTACTG
AATAACATGGGCCAGGCAGAAAAGGAGTTCAGGGTTGAAGTTGAGGCCATTGGCCATGTC
AGGCATAAAAATCTTGTCCGTCTGCTAGGATATTGCGTCGAAGGAATCCACAGGATGCTT
GTGTATGAGTATGTGAATAATGGAAACTTAGAACAGTGGATTCACGGCGCCATGCGACAA
CACGGTGTTCTTACTTGGGAAGCTCGAATGAAAATCGTTCTTGGAATTGCTAAGGCGCTT
GCTTATCTACATGAAGCCATAGAGCCGAAAGTTGTGCACCGTGATATCAAATCAAGCAAT
ATCCTAATTGATGAGGATTTCAATGGGAAGCTTTCTGATTTTGGATTGGCCAAGATGTTG
GGTGCAGGGAAGAGCCATATCACAACTCGAGTTATGGGAACTTTCGGGTATGTGGCCCCC
GAGTATGCCAACACAGGTCTGTTAAATGAGAAGAGTGACGTGTACAGTTTTGGCGTGCTG
CTCCTGGAAGCAGTGACCGGGAGGGATCCTGTCGACTATGGTCGGCCAGCTAATGAGGTG
CATCTGGTGGAGTGGCTCAAAATGATGGTTGGCACGAAGAGAGCCGACGAGGTGGTGGAC
CGTGACATGGAGGTGAAGCCAACCATCCGCGCTCTCAAGCGCGCTCTCCTAGTGGCGCTG
CGGTGCGTTGACCCGGACTCCGAGAAGAGACCCACGATGGGTCACGTCGTCCGGATGCTC
GAGGCAGAGGATGTCCCGTCGCGGGAGGACCGGAGGAGCCGGAGGGGCGGCCACGCCGGT
GGCAATGCGGACGCAGAGTCCAAAGCGAGCTCGAGCGAGTTCGAGGTGAGCGGTGACTCA
GGGCCCTCAGCGAGGTTCCAGCCCTAAAGATCGGCGTCGACGAACAAGGGCGTCCCCAAG
AACTCGGCTCCGGCCGAGTGTAGTAGAGATAGCATGATGAGCATTTCCTGTAGGACATTG
CATTGCGGTTCATTTTATATTGTAGGCGGTAGAGAAATAGTAGTGCTGATTGATCATCAT
CCCCTGAGACTGGGACTGAGACCTTTGCTGTAGCTTCCTTTGGGCACCCTGTACAGATTG
TTTCCTCCTTTCTTTTCTGTTTTCTTTGTCTAGGATATCTCTTTGAACAATAAATAAGCG
TATTAAGATTCTTTTAGGGTATTAAGATTGTATTATTAAATGTCCTTTGGTTAATTTCAC
TGTGCTTGATATAAAAAAAAAAAAAAAAA

Homology of Contig U35_18156 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g35450.1	510	protein\|serine/threonine-protein kinase, putative, expressed
Brachypodium v1_2	Bradi2g14510.1	510
Arabidopsis v10	AT2G42960.1	494	Protein kinase superfamily protein \| chr2:17868597-17870630 REVERSE LENGTH=494