barSeed - Barley Seed Development Database

Probe CUST_27101_PI390587928

Source Contig U35_44423

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27101_PI390587928	Hv_44K_v2	TCCACCGTTAAATCGACAAGTTGCTGCTAAACGAAGATTCGTCCAGTGAGTGACACATGA	490	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.561	5.949	1.387	0.657	0.217	0.325
Raw	187.120	335.292	65.972	53.233	4.878	9.003

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366459	2435	2e-24	2301 - 2360	100	60 / 60	plus	None
MLOC	MLOC_65575.2	1122	2e-24	67 - 126	100	60 / 60	minus	None
MLOC	MLOC_65575.1	1664	2e-24	111 - 170	100	60 / 60	minus	None
JLOC1	JLOC1_43160.2	1745	8e-25	1527 - 1586	100	60 / 60	plus
JLOC1	JLOC1_43160.1	1156	8e-25	938 - 997	100	60 / 60	plus
Harvest21	ABC42122	570	3e-25	491 - 550	100	60 / 60	plus
Harvest35	U35_44423	570	3e-25	491 - 550	100	60 / 60	plus

Contig Sequence (570 bp)

>U35_44423 570 Hv_44K_v2
TCCGGCGGTGATCGCAGCCACCTCCATCGCCGTTGGGCTCCGGGGAGTGCTCCTACATGT
TGCCATTGTTCAGGCAGCACTTCCACAAGGAATTGTTCCATTCGTGTTTGCCAAGGAGTA
TAACTGCCATCCTCAAATACTTAGCACAGCGGTTATTTTTGGAATGCTGGTGGCGCTCCC
GATCACGATACTCTACTACGTTCTCCTCGGGATATAGAGTCATAATCTTGAAGAACCAAG
GCTGCAAATCTATGTAGGGAGAAGTAGAATTCTAGAGAGAAAATGGCTAATGAACATGTG
GGTTGTCTTGAATACCTGAAGATGCATGAGATGAGATCAAGCAGAAGGATAGGGAGAACT
AAGTAGGACCCTAGACAGGAATTCAAAGGAAAGACAAACATAACCTTTGATTCCATTTTT
TATTTTTTATATTATTTTTGCTACTGTTTTAGATCCAAAGTAAAAGCTAGGCCTTTTGAG
TACGGAGAGTTCCACCGTTAAATCGACAAGTTGCTGCTAAACGAAGATTCGTCCAGTGAG
TGACACATGATCCGGCCACAAGTGTGTGCC

Homology of Contig U35_44423 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None