barSeed - Barley Seed Development Database

Probe CUST_270_PI415269222

Source Contig TA46841_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_270_PI415269222	Hv_44K_v2	TAGTATATAATAGTAGTACTATTAAATCGTAAGGCGCCCTCTGTTGCATTCGCCACAGTT	920	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68996.1	720	3e-21	171 - 230	97	58 / 60	minus	ABC16079
JLOC1	JLOC1_45700.1	708	2e-21	171 - 230	97	58 / 60	minus
Harvest21	ABC16079	1011	3e-25	920 - 979	100	60 / 60	plus	ABC16079
Harvest35	U35_22261	1011	3e-25	920 - 979	100	60 / 60	plus

Contig Sequence (980 bp)

>TA46841_4513 980 Hv_44K_v2
GTATTACTAGAAGACTTGCTTGGCCCAAGTAGCTAGTATCGCTCTCTGTCTGTCATCTTC
AACAATCCAATGGGGAAACAGACAGCAGTAGCACTAGTGCTTCTCGGTGTGCTCTGTGGA
ATAGCTTCTCATGGGGTCGATGCCCAGTATTACTGGACGAGCGCCACGGCGACGTTCTAC
GGCGGCGCCGACGGCTCTGGCACCATGGGAGGCGCGTGTGGGTACGGCAACCTGTACGGC
TCCGGGTACGGGATCAACAACGCCGCGCTGAGCACGGCGCTCTTCAACGACGGCGCCATG
TGCGGGGCGTGCTACATCATCTACTGCGACACGGGCAGGAGCAAGATGTGCAGGCCGGGC
ACCCAGATCACCGTCTCCGCCACCAACTTCTGCCCGCCCAACTGGGCGCTCCCCAGCAAC
AACGGGCGGGTGGTGCAACCCGCCGCGCCTCCACTTCGACATGTCGCAGCCCGCCTGGAC
CAGCATCGCCATCTACCAGGCCGGCATAGTCCCGGTCATGTACAAGAGGGTCTCCTGCCA
GAAGCGCGACGGCATCCGCTTCGGCATCTCCGGGAGGGACTACTTCGAGCTGGTGGTGGT
GACCAACGTCGGCGGCAGCGGGGTCGTGGTGCAGATGTGGATCAAGGGCTCCAACACCAA
CTGGCTCGCCATGAGCCGGAACTGGGGCGCAAACTGGCAGAGCAACGCCTACCTCAACGG
CCAGAGGCTCTCCTTCAGGGTCAGGCTCGACGACGGCCGCGAGGCCACGGCCAGCGACGT
CGCGCCGTCCAACTGGTGGTTCGGGGCCACATACAGTTCCTGGATCAACTTCTACTAGCT
AGTACCGGCCGGACCATGCGCGCATGCATCAATCAAACCGGTTCATCCACGGCACTGCTT
AATCTATCATCATTTTACTGTAGTATATAATAGTAGTACTATTAAATCGTAAGGCGCCCT
CTGTTGCATTCGCCACAGTT

Homology of Contig TA46841_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g19570.1	256	2e-83	protein\|expansin precursor, putative, expressed
Brachypodium v1_2	Bradi2g31760.1	255	4e-100
Arabidopsis v10	AT4G01630.1	255	5e-66	\| Symbols: ATEXPA17, ATEXP17, ATHEXP ALPHA 1.13, EXPA17 \| expansin A17 \| chr4:700653-701527 FORWARD LENGTH=255