barSeed - Barley Seed Development Database

Probe CUST_270_PI390587928

Source Contig U35_20065

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_270_PI390587928	Hv_44K_v2	TTTCGAAAGATCTGTTTGCCAATAGAAAACTGCAGAATGCATGTTGGTTATTGTTTGATC	575	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.312	0.554	0.906	1.825	1.433	2.425
Raw	59.155	167.634	238.968	750.934	209.170	382.539

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69751.2	1759	2e-24	705 - 764	100	60 / 60	plus	ABC12247
JLOC1	JLOC1_46240.3	1297	8e-25	657 - 716	100	60 / 60	plus
JLOC1	JLOC1_46240.1	1741	8e-25	682 - 741	100	60 / 60	plus
Harvest21	ABC12247	652	3e-25	576 - 635	100	60 / 60	plus	ABC12247
Harvest35	U35_20065	652	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (652 bp)

>U35_20065 652 Hv_44K_v2
GCGACGGCGGAGCCAGGAAGGCGGCGGAGGAGGAGAAACAGCCGGACCCCGTGGTGAACG
TCTACTCGGCCGCGGCGTACGGGGATCTGGAGCGACTGCGGCGGTTCGTGGAGCTTGACG
GCGCCGACGCGTCGCTCGCCGCGCCTGACGGCAACGGCTATCACGCTCTCCAGTGGGCCG
CGCTCAATAACTACCCCCACGTCGCGCTCTACATCATCGAGCATGGGGGGGACGTGAACG
CGGAAGACCATTCGCAGCAGACAGCGCTGCACTGGGCGGCGGTGCGCGGGGCCACGGCCA
CGGCCGATGTGCTGCTGGAGAACGGCGCGAGGCTAGAGGCAGGCGATGTGAACGGCTACC
GTGTATGCAATCGTTTTCTTTTTTGTTCTGAATTTGTTTTCTCGTTTTTCGATCTTCTGC
AGTGTTGTTGGATTTAGTGTCTGATATTTTGTTTTTGAGAAATGGGCGTCTCCCTTCCGA
TCTTTCCTAATTCAGACACTAAATAGAGTATGATTTAGTGCCTGATTGTTCAGGAGCTTA
AAACCGATAGCTTTGTGCAAAAGGCTTAGGTTGGTTTTCGAAAGATCTGTTTGCCAATAG
AAAACTGCAGAATGCATGTTGGTTATTGTTTGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20065 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34860.2	443	1e-56	protein\|palmitoyltransferase TIP1, putative, expressed
Brachypodium v1_2	Bradi4g16522.1	562	2e-63
Arabidopsis v10	None