barSeed - Barley Seed Development Database

Probe CUST_2709_PI390587928

Source Contig U35_14218

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2709_PI390587928	Hv_44K_v2	ATGTATTTTGCATTGACTGTCTTTTATTTGCCCGAGTCGCCCAGATGGCTTGTGAGCAAG	657	GeneList: cyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.929	1.458	1.584	0.739	0.487	0.346
Raw	483.625	442.356	531.726	355.053	89.496	71.188

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250212.1	2751	2e-24	757 - 816	100	60 / 60	plus	ABC03479 ABC48348
MLOC	MLOC_53885.1	2838	2e-24	1986 - 2045	100	60 / 60	minus	ABC03479 ABC48348
JLOC1	JLOC1_34648.2	2828	8e-25	758 - 817	100	60 / 60	plus
JLOC1	JLOC1_34648.1	3041	8e-25	971 - 1030	100	60 / 60	plus
Harvest21	ABC01279	751	1e-23	658 - 718	98	60 / 61	plus
Harvest35	U35_14218	1242	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (1242 bp)

>U35_14218 1242 Hv_44K_v2
CCGGCGTTGGCAGGGACTCCCCCTCTTATACGCCTGCCCGGCCCGCCAGACTCCTCACAG
CTTCTCCCCGTGCCCGAGCGGAGATCCCGAGTTCCGGACGCCGACGTCGGGTGGTAGGAT
TCGGCGGCCATGTCGTCGGGCGCCGTGCTGGTCGCCATAGCGGCGTCCATCGGGAACCTG
CTGCAGGGGTGGGATAATGCGACCATTGCAGGTGCCGTCCTGTACATAAAGAAGGAGTTC
AGCCTGGAGACCCAGCCCTTGATCGAGGGCCTCATCGTGGCCATGTCGCTCATCGGGGCG
ACGGTTATCACGACGTTCTCCGGGGCGGTGGCTGACGCTGTTGGTAGGCGGCCCCTGCTG
ATCGCCTCGTCTGTCCTCTACTTTGTCAGTGGCCTGGTGATGCTCTGGGCGCCCAACGTC
TATGTGTTGCTCTTGGCCAGGCTCATCGATGGGTTCGGTATCGGTTTGGCAGTCACCCTT
GTCCCTCTGTACATTTCGGAGACCGCCCCGACTGACATTAGAGGGCTGCTGAACACGCTG
CCGCAGTTCAGTGGGTCAGGAGGGATGTTCCTTTCTTACTGCATGGTGTTTACCATGTCC
CTCATGCCGCAGCCTGACTGGAGAATCATGCTTGGGGTTTTGTCGATCCCGTCGCTTATG
TATTTTGCATTGACTGTCTTTTATTTGCCCGAGTCGCCCAGATGGCTTGTGAGCAAGGGA
AGAATGGCTGAGGCCAAGCGAGTATTGCAAAGACTGCGGGGAAGGGAAGATGTCTCAGGA
GAGATGGCCCTTCTTGTTGAAGGATTGGGTGTTGGAAAAGACACACGCATCGGCCCATCC
ATCCATCCATCTTTGACTCGTCAGTTCAGATTCCGCATCCAGATCTAGGCGCCCGATCCG
GGGGGCGATGAACGGAGGCATCGCTCCGCCGCCGGCGATGGAGACGGCGGCGACCACGCC
GAGCCACCGGCGGCTGCCGGACTTCCTCCAGAGCGTGAACCTCAAGTACGTCAAGCTGGG
GTACCACTACCTCATCACCCACCTCATCACGCTGCTGCTGCTGCCGCTCATGGCCGTCAT
CGTCCTCGAGGCCGGCCGCACCGACCCCGACGACCTCCGCCAGCTCTGGCTGCATCTGCA
GTACAACCTGGTGTCTGTGCTCGTCCTCTCCGCCGTCCTCGTCTTCGGCGCTACCGTGTA
CGTGCTCACCCGTCCCCGCCCCGTCTACCTTGTCGACTTCGC

Homology of Contig U35_14218 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g39440.2	446	2e-146	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi3g32210.2	742	3e-147
Arabidopsis v10	AT4G35300.1	739	1e-126	\| Symbols: TMT2 \| tonoplast monosaccharide transporter2 \| chr4:16796432-16799071 REVERSE LENGTH=739