barSeed - Barley Seed Development Database

Probe CUST_27095_PI390587928

Source Contig U35_20470

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27095_PI390587928	Hv_44K_v2	TACAGCTAAATACGATAGTGTCGTTTCTTTGGTGAACAAGTTACTTCTGTTTGTGTGAAT	1135	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20847.1	3370	2e-24	777 - 836	100	60 / 60	plus	ABC01442 ABC01443 ABC14301 ABC52457
JLOC1	JLOC1_14451.1	1061	8e-25	777 - 836	100	60 / 60	plus
Harvest21	ABC14301	955	3e-25	833 - 892	100	60 / 60	plus	ABC14301
Harvest35	U35_20470	1258	3e-25	1136 - 1195	100	60 / 60	plus

Contig Sequence (1258 bp)

>U35_20470 1258 Hv_44K_v2
GTTACCCAACAACTCGAGCCCCTCAGCTCACCGGATATGAACGTTCAAGTTTCACTCTCC
TTTTCTGGAAAGAATGGACAGTCTGCTACATTGAATGTGAGAATACCAACATGGACATCT
GCCAGCGGTGCGAAAGCAACTTTAAATGACAAAGATTTGGGATCAGTAACTCCAGGCTCT
TTACTCTCAGTCACCAAACAGTGGAACTCAAATGATCACTTATCACTGCAATTCCCGATT
GCCCTAAGGACCGAAGCAATCAAAGATGACCGGCCGGAGTATGCATCTCTTCAAGCAATT
CTATTCGGGCCATTTGTTCTTGCGGGTCTCTCCTCCAGTGATTGTGATGCAAAAACCGGC
AGTGCTGTTTCAGACTGGATCACTGCAGTTCCTTCGTCACACAACTCACAGCTGATGACC
TTCACACAAGAATCAAGTGGGAAGACATTCGTCCTGTCAAGCTCAAACGGCTCTCTGACA
ATGCAAGAACGGCCTACAGTCGATGGCACAGACACCGCCATCCATGCGACATTCAGGGTG
CACCCTCAGGACACAGCAAGGCTGCATGGCACCTACGGCGCAACCCTTCAAGACACCTCT
GTGCTGATCGAGCCATTCGACATGCCAGGGACGGCGATCGCCAACGACCTCACCTTGTCC
ACACAAAAGAGCACTGGTTCCTTGTTCAACATAGTATCAGGGCTCGACGGGAAGCCGAAC
TCGGTTTCGCTCGAGCTCGGGACCAAACCAGGGTGCTTCTTGGTGTCTGGGGCAGATTAC
TCTGCCGGGACAAAGATCCAGGTCAGCTGCAAGAGTTCCATTCAGAGCATTGGCGGGATA
TTCGAGCAGGCAGCGAGCTTTGCACAGGCCGCTCCGCTGAGGCAGTACCACCCGATAAGC
TTCGTCGCGAAGGGGGTGCAGAGGAACTTCCTCCTGGAGCCATTGTACAGCCTGAGGGAC
GAATTCTACACGGCTTACTTCAACCTTGGGGCCTGACGCCGCAAGGTCACTTGCGCCTTG
GCACAAACAAACAAACCAAGAATACTACACGCCATCTTTCTTTCTCATTTATACTGTAGT
TTACAACAGGCAATAGAAGAGGAAATTAGTTGTTTCTTCTGGAATACTATGAAATTACAG
CTAAATACGATAGTGTCGTTTCTTTGGTGAACAAGTTACTTCTGTTTGTGTGAATTTTCT
TGTTTTAAGATGAACAAACCATGATGTTCATATATGTTGAAAAATGCTGCTAAAAGTT

Homology of Contig U35_20470 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10190.1	892	4e-180	protein\|DUF1680 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g07047.1	884	0.0
Arabidopsis v10	AT5G12960.1	865	6e-81	Putative glycosyl hydrolase of unknown function (DUF1680) \| chr5:4097788-4101518 FORWARD LENGTH=865