barSeed - Barley Seed Development Database

Probe CUST_27091_PI390587928

Source Contig U35_20474

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27091_PI390587928	Hv_44K_v2	AGCCATGTAATGTAGTGGTATCTGCATAATAATTGAGCCTTCTCAAGGACTTATCAGCTA	1557	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.249	1.569	1.025	0.849	0.417	0.489
Raw	391.313	767.707	434.110	552.920	97.421	125.263

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_5013.1	2075	8e-25	1833 - 1892	100	60 / 60	plus
Harvest21	ABC13161	1633	3e-25	1558 - 1617	100	60 / 60	plus	ABC13161
Harvest35	U35_20474	1633	3e-25	1558 - 1617	100	60 / 60	plus

Contig Sequence (1633 bp)

>U35_20474 1633 Hv_44K_v2
TCTTTCTCCATTGCTGCACCCTTGATTCGCGCAAAGGACGCCACGGCTCGCGCTCTCTCT
GTTGGTGGGCTGCTCAGGCGCGTGGTGCGGCTGGCCGGCGCTGCCGTCGGCGTGGTCTCG
GGGCTGTTTTACTGCCGTGGGATCGGGTGATGGCGGCGGCGGTGTTCGCCGGGGACGGGG
CCGCCGCGCGCGGGGGGTGCTCGGCGGAATGCGCCGGGGGGATCGAGAGGCCACCGGATC
TCGGGAGCAGGGCGGGGGACGGGTGCGGCAAGCGGAGCGTGTACCTCATGGAGTGCGTGC
CGCTGTGGGGCTGCGCCGCGGCGCGCGGCCGCGCCGCGGAGATGGAGGACGCGTGCGCCG
CCGTGCCGCGCTTCGCTGCCCTGCCGGCGCGGATGCTCGCCAGCAGCCGTGAGCTGGACG
GGATCGGGGGCGACTTCGATGCCGCCGAGCTCCGGCTCCCGGCGCACCTGTTCGGCGTCT
ACGATGGGCACGGCGGCTCGGAGGTCGCAAACTACTGCCGGGATAAGGTCCACGTTGTGT
TGAGAGAAGTGCTGAGAGACGGCAGGGGGTTGGAGGAACTGGGAGAAGTAGGGGAGGTGG
ACGTGAAGGAATCATGGGAGAAGGTTTTCGGTGATTGTTTCCAGAAGGTAGACGACGAGG
TGTCGGGGAAAGCGATCAGGTTTTCCAATGGCGTCACGGAGCTCCGTCCGGAGCCTATTG
CCGCTGATAACGTCGGTTCCACTGCTGTGGTTGCGATTGTCTGCTCTTCTCATGTCATAA
CTGCGAATTGTGGAGATTCACGCGTCGTGCTCTGCCGTGGGAAGGAGCCGATTGCTCTGT
CCGTCGATCACAAACCTGATAGGAAAGACGAGCGTGCCAGGATTGAGGCCGCAGGTGGAA
AGGTCATTGACTGGAATGGTTATCGTGTCTCTGGTATTCTCGCAATGTCACGGTCAATCG
GTGACCGATACCTGAAACCATTTCTGATTCCAAAGCCTGAAGTCAGCGTTGTTCCTCGGG
CAAAAGATGATGACTGCCTCATTCTAGCAAGCGATGGTCTGTGGGATGTCATGTCGAATG
AAGATGCCTGCAAAGTTGCCCGGCGACAGATCCTTCTGTGGTACAAGAATAATAACGACG
GTGCAAATTCTGATGGAGGCAGCGAACCCACTATGAATCCTGCTGCAAAAGCAGCTGCGG
ATTGTCTCGTGAGGCTAGCCCTGATGAAAGGGAGCGGGGACAACATTAGTGTCATAGTTA
TCGACCTGAAATCAAGAAAGAAGCCCAAGGGCAAATCCTAACATGCCCGTAATTCACCTG
ACTAGCTGACCGTGTCTGCGACCGGAGTTTCGACTGCTAGTCTGCTTTCCTTGCAAGAAC
GGCACGCCTACTCTTTTGTTTTGTTTATTCAGTCGTCTGCAAGAGCTGTATGTACATATG
CTGATAGGTCTACTTCCGATAATCTGATGTATGGGGTGTGTGTTGGCGTGTTTATGTGTA
CCCCCCTAGCCTTTTGGTTTTGGGCTGTTCACACTTGACTTCCGTCAGGTTCAGAACAGC
CATGTAATGTAGTGGTATCTGCATAATAATTGAGCCTTCTCAAGGACTTATCAGCTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_20474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46040.1	388	1e-168	protein\|protein phosphatase 2C, putative, expressed
Brachypodium v1_2	Bradi2g18510.1	375	1e-161
Arabidopsis v10	AT1G72770.1	511	5e-111	\| Symbols: HAB1 \| HYPERSENSITIVE TO ABA1 \| chr1:27390998-27392851 FORWARD LENGTH=511