barSeed - Barley Seed Development Database

Probe CUST_2708_PI390587928

Source Contig U35_14219

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2708_PI390587928	Hv_44K_v2	CATGTAACTAGGGTAAAACCCAACAATAATGCAAAACGGAAAGCTTCTCCATCCAAAAAA	2373	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.012	0.010	0.265	1.732	3.155	4.728
Raw	25.086	35.278	1287.107	11744.163	8038.773	13069.577

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13434.5	2472	2e-24	2031 - 2090	100	60 / 60	minus	ABC01278 ABC01281 ABC43458
MLOC	MLOC_13434.4	3672	2e-24	3231 - 3290	100	60 / 60	minus	ABC01278 ABC01281 ABC43458
JLOC1	JLOC1_9094.3	1410	8e-25	969 - 1028	100	60 / 60	minus
JLOC1	JLOC1_9095.2	2603	8e-25	383 - 442	100	60 / 60	plus
JLOC1	JLOC1_9095.1	2607	8e-25	383 - 442	100	60 / 60	plus
JLOC1	JLOC1_9094.2	1846	8e-25	1405 - 1464	100	60 / 60	minus
JLOC1	JLOC1_9094.1	1925	8e-25	1484 - 1543	100	60 / 60	minus
Harvest21	ABC01284	2742	3e-25	2647 - 2706	100	60 / 60	plus
Harvest21	ABC01281	2660	3e-25	2374 - 2433	100	60 / 60	plus	ABC01281
Harvest21	ABC01280	369	6e-22	316 - 369	100	54 / 54	plus
Harvest35	U35_14219	2471	3e-25	2374 - 2433	100	60 / 60	plus
Harvest35	U35_14221	2694	6e-22	2641 - 2694	100	54 / 54	plus

Contig Sequence (2471 bp)

>U35_14219 2471 Hv_44K_v2
ACCGAGAACCACAAAACTAGAGATCAATTCATTGACAGTCCACCGAGATGGCTAAGCGGC
TGGTCCTCTTTGTGGCGGTAATCGTCGCCCTCGTGGCTCTCACCACCGCTGAACGTGAGA
TCAATGGGAACAACATTTTCCTTGATAGCCGCTCTAGGCAGCTACAGTGTGAGCGCGAGC
TCCAGGAGAGCTCGCTCGAGGCGTGCCGGCGGGTCGTGGACCAACAGCTGGTTGGCCAGC
TGCCATGGAGCACGGGGCTCCAGATGCAGTGCTGCCAGCAGCTTCGGGACGTCAGCCCCG
AGTGCCGCCCCGTCGCCCTCAGCCAGGTCGTGAGGCAATACGAGCAGCAAACCGAGGTGC
CATCCAAGGGAGGATCCTTCTACCCGGGCGGGACCGCACCGCCGCTGCAGCAAGGAGGAT
GGTGGGGAACCTCTGTAAAATGGTACTACCCAGACCAAACTTCTTCGCAACAGTCATGGC
AAGGGCAACAAGGGTACCACCAAAGCGTAACTTCTTCCCAGCAGCCAGGACAAGGGCAGC
AAGGGTCCTACCCAGGTTCAACTTTCCCGCAGCAGCCAGGACAAGGACAACAACCAGGAC
AGAGGCAGCCATGGTCCTATCCAAGTGCAACTTTCCCACAACAGCCAGGGCAAGGGCAAG
GGCAACAAGGGTACTACCCAGGCGCAACTTCCCTGCTGCAGCCAGGACAAGGGCAACAAG
GGCCCTACCAGAGTGCAACTTCTCCACAGCAGCCAGGACAAGGACAGGGACAACAAGAGC
CCTATCCAATTGCAACTTCCCCGCATCAGCCAGGACAATGGCAACAACCAGGACAAGGGC
AACAAGGGTACTACCCAAGTGTAACTTCTCCACAACAGTCGGGACAAGGGCAACAAGGGT
ACCCAAGTACAACTTCTCCACAACAATCGGGGCAAGGGCAACAGCTGGGACAAGGGCAAC
AACCAGGACAAGGGCAACAAGGGTACCCAAGTGCAACTTTTCCACAACAGCCAGGACAAT
GGCAACAAGGGTCCTACCCAAGTACAACTTCTCCGCAGCAGTCAGGACAAGGGCAACAAG
GGTACAACCCAAGTGGAACTTCTACGCAGCAGCCGGGACAAGTGCAACAGTTGGGACAAG
GGCAACAAGGGTACTACCCAATTGCAACTTCTCCGCAGCAGCCAGGACAAGGGCAACAGC
TAGGACAAGGGCAACAACCAGGACATGGGCAACAGCTAGTGCAAGGGCAACAACAAGGAC
AAGGGCAACAAGGACACTACCCAAGTATGACTTCTCCGCACCAAACAGGACAAGGGCAAA
AAGGATACTACCCAAGTGCAATTTCTCCGCAGCAGTCAGGACAAGGACAACAAGGATACC
AGCCTAGTGGAGCTTCTTCACAGGGGTCGGTGCAAGGGGCGTGCCAGCACAGCACATCTT
CTCCGCAGCAGCAAGCACAAGGGTGCCAAGCTTCTTCACCAAAGCAAGGGCTAGGGTCGT
TGTACTACCCGAGTGGAGCTTATACACAACAGAAACCAGGGCAAGGGTACAACCCAGGTG
GAACTTCTCCGCTGCACCAGCAAGGGGGAGGGTTCGGCGGCGGGTTAACGACGGAGCAAC
CGCAGGGAGGAAAGCAGCCATTCCATTGCCAGCAAACCACTGTCTCCCCTCACCAGGGTC
AGCAAACCACTGTTTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTC
AGCAAACCACTGTCTCCCCTCACCAGGGTCAGCAAACCACCGTCTCCCCTCACCAGGGTC
AGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCCGGGTC
AGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCCGGGTC
AGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTC
AGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTC
AGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAGCCCGGCGAGCAGCCTTGCGGTTTCC
CTGGCCAGCAAACCACCGTGTCTCTGCACCATGGTCAGCAGTCCAACGAGTTGTACTACG
GCAGCCCATACCATGTTAGCGTGGAGCAGCCGTCGGCCAGCCTAAAGGTAGCAAAGGCGC
AGCAGCTCGCGGCGCAGCTGCCGGCAATGTGTCGGCTGGAGGGCGGCGGCGGCCTGTTGG
CCAGCCAGTAGTAGAACTCTGGCAGCTCGCATGGTGCTTGGGCATGCATGCACCTTAGCT
ATACAATAAACGTGACGTGTGCTTGCAGTTTTTCATGTAACTAGGGTAAAACCCAACAAT
AATGCAAAACGGAAAGCTTCTCCATCCAAAAAAAAAAAAAAAAACTGGTGCTATAAAAAA
AAAAAAAAAAA

Homology of Contig U35_14219 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None