barSeed - Barley Seed Development Database

Probe CUST_27081_PI390587928

Source Contig U35_32454

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27081_PI390587928	Hv_44K_v2	AGAACGTGTTGTTAGGGCACTGAATTTGATACGTGATTGTTGGGATGCATTTGGTATCAA	266	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.755	0.882	1.419	1.516	0.968	0.961
Raw	44.788	76.710	114.944	178.244	42.488	47.351

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248880.1	3253	2e-24	373 - 432	100	60 / 60	plus	ABC07623
MLOC	MLOC_4291.1	1283	2e-24	994 - 1053	100	60 / 60	plus	None
JLOC1	JLOC1_2648.1	1303	8e-25	897 - 956	100	60 / 60	plus
Harvest35	U35_32454	326	3e-25	267 - 326	100	60 / 60	plus

Contig Sequence (326 bp)

>U35_32454 326 Hv_44K_v2
GCATCTGTTGGGCTAGAAATCCGAGTTGTCGGCAATGACAGCGGCGAAAAGGTTTCAATT
TTGGCGGGAACACTTGCTCGACTTGATAGAGAAGCGCCTCACTACAAGAAGGATGGGTAC
AATGATTTCAACACATTCTATATGCAGGCTGCATCTGGAACTAAAGGTGGCTCTAGTGGT
TCCCCAGTTGTTGATTGCCAAGGAAGAGCTGTTGCCCTGAATGCCGGAAGCAAATCTTCC
AGTGCTTCTGCCTTCTTCCTTCCATTAGAACGTGTTGTTAGGGCACTGAATTTGATACGT
GATTGTTGGGATGCATTTGGTATCAA

Homology of Contig U35_32454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None