barSeed - Barley Seed Development Database

Probe CUST_27080_PI390587928

Source Contig U35_18161

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27080_PI390587928	Hv_44K_v2	GCTTGGTGTTGTTAATGTTGCAGACTCAAGAATATATTTTATTAATATGCAAGTGCCGTC	943	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.178	1.136	1.155	0.881	0.332	0.475
Raw	2590.490	3914.380	3490.317	4218.013	554.788	867.125

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59905.1	1021	7e-23	12 - 72	98	60 / 61	minus	ABC08497
JLOC1	JLOC1_39023.1	1195	4e-23	1011 - 1071	98	60 / 61	plus
Harvest21	ABC08497	773	3e-25	12 - 71	100	60 / 60	minus	ABC08497
Harvest35	U35_18161	1014	3e-25	944 - 1003	100	60 / 60	plus

Contig Sequence (1014 bp)

>U35_18161 1014 Hv_44K_v2
CCGCCAGCCGCCTTCGCCCCCCTCGAGAGCCATCATCCCACGGACCCGCCGCCGCCGCCG
CCGCCGTCGAGCACTCGAGCGGAGCAGAGGAAGCGGTGCCAGGGCTTCGGATCGAGGGAG
GATGGGGAAGTCGAAGAGCAAGGGCGCCAAGTTCGCCGCCGTCAAGAAGATCATCAGCAA
GAAGACCATCAAGAAGCACAAGGAGAAGCTGCTGGAGGAGGTGCTGGACCCCCGGAAGAA
GGCCGCCGAGAAGGAGAAGCTCGGCCGGAATGTGCCGCAGGTGTCGTCGGCGCTCTTCTT
CAGCTACAACATGGCGCTCGGGCCGCCCTACCGGGTCATCGTCGACACCAACTTCATCAA
TTTCTCCATCCAGAACAAGTTAGATTTGGAGAAAGGAATGATGGATTGCCTTTATGCAAA
ATGTACCCCTTGCATCACTGATTGTGTTATGGCTGAGCTTGAAAAGCTAGGACAAAAATA
CCGTGTTGCGTTGAGAATTGCGAAGGACCCTAGGTTCCAGAGATTAGCGTGCACACACAA
GGGAACTTATGCTGATGACTGTATTGTTGAGAGAATTACTCAGCACAAATGCTACATTGT
TGCCACTTGCGATAGAGATTTAAAGAGGAGAATAAGAAAGGTTCCTGGTGTTCCAATCAT
GTATATCACCCAACACAGGTACTCGATAGAACGACTCCCTGAAGCTACAATTGGTGGAGC
ACCAAGAATCTGATTAGCTGAAATACACCGTCACAGTTGCCCAAGTTCCTTGATTTAGGA
TGGACATGAGTACTGCCGTGCTGAATCGAGCTGATTGTAACCACTTCAAAATTGTGTACC
AACCTCTTTAGGGCATCATTTTCATAAATTTTGTAAGGAACTTTAGAAGAATGTCTATCT
TTGTCCTTTGTTTTGAGCTGAACTGTAGCCAACTTCCCAGATTGCTTGGTGTTGTTAATG
TTGCAGACTCAAGAATATATTTTATTAATATGCAAGTGCCGTCATAGGTTCAGT

Homology of Contig U35_18161 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g06410.2	200	7e-115	protein\|rRNA-processing protein FCF, putative, expressed
Brachypodium v1_2	Bradi1g48740.1	200	2e-118
Arabidopsis v10	AT2G46230.1	196	8e-95	PIN domain-like family protein \| chr2:18984459-18985850 REVERSE LENGTH=196