- Probe CUST_2707_PI390587928
- Source Contig U35_14220
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2707_PI390587928 | Hv_44K_v2 | CAGCAAACCACCGTGTCTCTGCACCATGGTCAGCAGTCCAACGAGTTGTACTACGGCAGC | 522 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.261 | 1.830 | 3.517 | 4.356 |
| Raw | 9.896 | 16.494 | 1074.622 | 10963.093 | 7559.397 | 10243.380 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_13434.5 | 2472 | 2e-24 | 2299 - 2358 | 100 | 60 / 60 | minus | ABC01278 ABC01281 ABC43458 |
| MLOC | MLOC_13434.4 | 3672 | 2e-24 | 3499 - 3558 | 100 | 60 / 60 | minus | ABC01278 ABC01281 ABC43458 |
| MLOC | AK373042 | 2382 | 7e-23 | 2122 - 2181 | 98 | 59 / 60 | plus | ABC01278 ABC01281 ABC43458 |
| JLOC1 | JLOC1_9094.3 | 1410 | 8e-25 | 1237 - 1296 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_9095.2 | 2603 | 8e-25 | 115 - 174 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9095.1 | 2607 | 8e-25 | 115 - 174 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_9094.2 | 1846 | 8e-25 | 1673 - 1732 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_9094.1 | 1925 | 8e-25 | 1752 - 1811 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC01284 | 2742 | 3e-25 | 2379 - 2438 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01283 | 582 | 3e-25 | 523 - 582 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01282 | 396 | 3e-25 | 143 - 202 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01281 | 2660 | 3e-25 | 2106 - 2165 | 100 | 60 / 60 | plus | ABC01281 |
| Harvest21 | ABC01280 | 369 | 3e-25 | 48 - 107 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01278 | 753 | 3e-25 | 281 - 340 | 100 | 60 / 60 | minus | ABC01278 |
| Harvest21 | ABC01277 | 866 | 3e-25 | 594 - 653 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01273 | 1735 | 3e-25 | 1423 - 1482 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01272 | 1071 | 3e-25 | 997 - 1056 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_38427 | 638 | 3e-25 | 414 - 473 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14221 | 2694 | 3e-25 | 2373 - 2432 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14220 | 582 | 3e-25 | 523 - 582 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14219 | 2471 | 3e-25 | 2106 - 2165 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14217 | 972 | 3e-25 | 898 - 957 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14213 | 1735 | 3e-25 | 1423 - 1482 | 100 | 60 / 60 | plus |
Contig Sequence (582 bp)
>U35_14220 582 Hv_44K_v2 GCACAACAGAAACCAGGGCAAGGGTACAACCCAGGTGGAACTTCTCCGCTGCACCAGCAA GGGGGAGGGTTCGGCGGCGGGTTAACGACGGAGCAACCGCAGGGAGGAAAGCAGCCATTC CATTGCCAGCAAACCACTGTCTCCCCTCACCAGGGTCAGCAAACCACTGTCTCCCCTCAT CAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCAC CAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCAT CCGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCAT CCGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCCCTCAT CAGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCCCTCAC CAGGGTCAGCAGCCCGGCGAGCAGCCTTGCGGTTTCCCTGGCCAGCAAACCACCGTGTCT CTGCACCATGGTCAGCAGTCCAACGAGTTGTACTACGGCAGC
Homology of Contig U35_14220 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |