barSeed - Barley Seed Development Database

Probe CUST_27076_PI390587928

Source Contig U35_32457

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27076_PI390587928	Hv_44K_v2	TTCTGTAATGGTCACAGATGGCGAAACAATTGTCTACTGTTCTGTTTGCATGGCTGATAC	385	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362539	3218	2e-24	405 - 464	100	60 / 60	plus	ABC16172
MLOC	MLOC_59774.3	884	2e-24	781 - 840	100	60 / 60	minus	None
MLOC	MLOC_59774.4	762	2e-24	428 - 487	100	60 / 60	minus	None
MLOC	MLOC_59774.1	1402	2e-24	1298 - 1357	100	60 / 60	minus	None
JLOC1	JLOC1_38913.1	652	8e-25	46 - 105	100	60 / 60	plus
Harvest35	U35_32457	445	3e-25	386 - 445	100	60 / 60	plus

Contig Sequence (445 bp)

>U35_32457 445 Hv_44K_v2
ACTCTACAGCCCGTGCGCACCCCCCCCCCCCCCCCCGCGGCCGAGAGATGCTCGCGAGTC
CCACCACGCTCCACCATCTCCTCCTCCCGGCGCCGCCACATCTCGCCTTCGTTCTCCCGC
ACACCGCGCCGCCGCTTCACGCGTGGCTCCCCCTTTCCCGCGTGGCGCCGCCGCGCGTCG
CGGCACTCACGCATGGCTCCTCGCGCCGAATGCGACGGAGGGGTGCGAGGGATAAAGTTG
TGGCTGCCGTAGGACACGAGGCGGTGCCCGCGGTGGCGGCCGAGGAGGCGAGCAGCTCCG
GCCCGACCAAGTTCTCCGTGAAAATTCCCGTCGGCGACCGCCACATATTAGTGGAAACAG
GACACATTGGGAGGCAAGCTAGTGGTTCTGTAATGGTCACAGATGGCGAAACAATTGTCT
ACTGTTCTGTTTGCATGGCTGATAC

Homology of Contig U35_32457 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None