barSeed - Barley Seed Development Database

Probe CUST_2706_PI390587928

Source Contig U35_14221

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2706_PI390587928	Hv_44K_v2	GTTTTTCATGTAACTAGGGTAAAACCCAACAATAATGCAAAACGGAAAGCTTCTCCATCC	2634	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.011	0.010	0.290	1.795	3.741	5.466
Raw	15.101	26.142	1084.875	9179.297	7286.640	11684.143

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13434.5	2472	2e-24	2037 - 2096	100	60 / 60	minus	ABC01278 ABC01281 ABC43458
MLOC	MLOC_13434.4	3672	2e-24	3237 - 3296	100	60 / 60	minus	ABC01278 ABC01281 ABC43458
JLOC1	JLOC1_9094.3	1410	8e-25	975 - 1034	100	60 / 60	minus
JLOC1	JLOC1_9095.2	2603	8e-25	377 - 436	100	60 / 60	plus
JLOC1	JLOC1_9095.1	2607	8e-25	377 - 436	100	60 / 60	plus
JLOC1	JLOC1_9094.2	1846	8e-25	1411 - 1470	100	60 / 60	minus
JLOC1	JLOC1_9094.1	1925	8e-25	1490 - 1549	100	60 / 60	minus
Harvest21	ABC01284	2742	3e-25	2641 - 2700	100	60 / 60	plus
Harvest21	ABC01281	2660	3e-25	2368 - 2427	100	60 / 60	plus	ABC01281
Harvest21	ABC01280	369	3e-25	310 - 369	100	60 / 60	plus
Harvest35	U35_14221	2694	3e-25	2635 - 2694	100	60 / 60	plus
Harvest35	U35_14219	2471	3e-25	2368 - 2427	100	60 / 60	plus

Contig Sequence (2694 bp)

>U35_14221 2694 Hv_44K_v2
CTTCGAGTGCCCGCCGATTTGCCAGCAATGGCTAACAGACACATATTCTGCCAAAACCCC
AGAACAATAATCACTTCTCGTAGATGAAGAGAACAGACCAAGATACAAACGTCCACGCTT
CAGCAAACAGTACCCCAGAACTAGGATTAAGCCGATTACGCGGCTTTAGCAGACCGTCCA
AAAAAACTGTTTTGCAAAGCTCCAATTCCTCCTTGCTTATCCAATTTCTTTTGTGTTGGC
AAACTGCACTTGTCCAACCGATTTTGTTCTTCCCGTGTTTCTTCTTAGGCTAACTAACAC
AGCCGTGCACATAGCCATGGTCCGGAATCTTCACCTCGTCCCTATAAAAGCCCAGCCAAT
CTCCACAATCTCATCATCACCGAGAACACCGAGAACCACAAAACTAGAGATCAATTCATT
GACAGTCCACCGAGATGGCTAAGCGGCTGGTCCTCTTTGTGGCGGTAATCGTCGCCCTCG
TGGCTCTCACCACCGCTGAACGTGAGATCAATGGGAACAACATTTTCCTTGATAGCCGCT
CTAGGCAGCTACAGTGTGAGCGCGAGCTCCAGGAGAGCTCGCTCGAGGCGTGCCGGCGGG
TCGTGGACCAACAGCTGGTTGGCCAGCTGCCATGGAGCACGGGGCTCCAGATGCAGTGCT
GCCAGCAGCTTCGGGACGTCAGCCCCGAGTGCCGCCCCGTCGCCCTCAGCCAGGTCGTGA
GGCAATACGAGCAGCAAACCGAGGTGCCATCCAAGGGAGGATCCTTCTACCCGGGCGGGA
CCGCACCGCCGCTGCAGCAAGGAGGATGGTGGGGAACCTCTGTAAAATGGAACTACCCAG
ACCAAACTTCTTCGCAACAGTCATGGCAAGGGCAACAAGGGTACCACCAAAGCGTAACTT
CTTCCCAGCAGCCAGGACAAGGGCAGCAAGGGTCCTACCCAGGTTCAACTTTCCCGCAGC
AGCCAGGACAAGGACAACAACCAGGACAGAGGCAGCCATGGTCCTATCCAAGTGCAACTT
TCCCACAACAGCCAGGGCAAGGGCAAGGGCAACAAGGGTACTACCCAGGCGCAACTTCCC
TGCTGCAGCCAGGACAAGGGCAACAAGGGCCCTACCAGAGTGCAACTTCTCCACAGCAGC
CAGGACAAGGACAGGGACAACAAGAGACCTATCCAATTGCAACTTCCCCGCATCAGCCAG
GACAATGGCAACAACCAGGACAAGGGCAACAAGGGTACTACCCAAGTGTAACTTCTCCAC
AACAGTCGGGACAAGGGCAACAAGGGTACCCAAGTACAACTTCTCCACAACAATCGGGGC
AAGGGCAACAGCTGGGACAAGGGCAACAACCAGGACAAGGGCAACAAGGGTACCCAAGTG
CAACTTTTCCACAACAGCCAGGACAATGGCAACAAGGGTCCTACCCAAGTACAACTTCTC
CGCAGCAGTCAGGACAAGGGCAACAAGGGTACAACCCAAGTGGAACTTCTACGCAGCAGC
CGGGACAAGTGCAACAGTTGGGACAAGGGCAACAAGGGTACTACCCAATTGCAACTTCTC
CGCAGCAGCCAGGACAAGGGCAACAGCTAGGACAAGGGCAACAACCAGGACATGGGCAAC
AGCTAGTGCAAGGGCAACAACAAGGACAAGGGCAACAAGGACACTACCCAAGTATGACTT
CTCCGCACCAAACAGGACAAGGGCAAAAAGGATACTACCCAAGTGCAATTTCTCCGCAGC
AGTCAGGACAAGGACAACAAGGATACCAGCCTAGTGGAGCTTCTTCACAGGGGTCGGTGC
AAGGGGCGTGCCAGCACAGCACATCTTCTCCGCAGCAGCAAGCACAAGGGTGCCAAGCTT
CTTCACCAAAGCAAGGGCTAGGGTCGTTGTACTACCCGAGTGGAGCTTATACACAACAGA
AACCAGGGCAAGGGTACAACCCAGGTGGAACTTCTCCGCTGCACCAGCAAGGGGGAGGGT
TCGGCGGCGGGTTAACGACGGAGCAACCGCAGGGAGGAAAGCAGCCATTCCATTGCCAGC
AAACCACTGTCTCCCCTCACCAGGGTCAGCAAACCACTGTCTCCCCTCATCAGGGTCAGC
AAACCACTGTCTCCCCTCATCAGGGTCAGCAAACCACTGTCTCCCCTCACCAGGGTCAGC
AAACCACCGTCTCCCCTCACCAGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGC
AAACCACTGTCTCCCCTCATCCGGGTCAGCAAACCACCGTCTCCCCTCATCAGGGTCAGC
AAACCACCGTCTCCCCTCATCAGGGTCAGCAAACCACCGTCTCCCCTCACCAGGGTCAGC
AGCCCGGCGAGCAGCCTTGCGGTTTCCCTGGCCAGCAAACCACCGTGTCTCTGCACCATG
GTCAGCAGTCCAACGAGTTGTACTACGGCAGCCCATACCATGTTAGCGTGGAGCAGCCGT
CGGCCAGCCTAAAGGTAGCAAAGGCGCAGCAGCTCGCGGCACAGCTGCCGGCAATGTGTC
GGCTGGAGGGCGGCGGCGGCCTGTTGGCCAGCCAGTAGTAGAACTCTGGCAGCTCGCATG
GTGCTTGGGCATGCATGCACCTTAGCTATACAATAAACGTGACGTGTGCTTGCAGTTTTT
CATGTAACTAGGGTAAAACCCAACAATAATGCAAAACGGAAAGCTTCTCCATCC

Homology of Contig U35_14221 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None