barSeed - Barley Seed Development Database

Probe CUST_27066_PI390587928

Source Contig U35_20481

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27066_PI390587928	Hv_44K_v2	AAGTTGGTTGCTGTTCTGAATGGCATGGTTATTATGAACCAGCAAGTTTCATCATCTAAA	851	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.199	1.515	1.294	1.028	0.396	0.350
Raw	3539.057	6966.030	5131.140	6548.617	874.199	836.513

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_44942.1	867	8e-25	794 - 853	100	60 / 60	plus
Harvest21	ABC12616	915	3e-25	852 - 911	100	60 / 60	plus	ABC12616
Harvest35	U35_20481	915	3e-25	852 - 911	100	60 / 60	plus

Contig Sequence (915 bp)

>U35_20481 915 Hv_44K_v2
ATGATGAAACTCGACAAAACTTGGTGGGGACTTTTCCGAAATCCGATATATTTCTGCCCC
GTCCTCTGCCCCATTCCCCAAAACCCAACCAAACCCCTCCCTCCTCGCCTCCCCACCATG
GCTCCCGGTGCCCTAGCCCGCCTCGTCATCGGCCGCCGCGCAGCGTCCCCGCTCCTGGCG
CGCCCCTTCGCCGCGAAGGCCCGCGCGTCGCAGCGGCCGAAGGAGCCGGAGCCCCTGTCG
GAGGAGGACGACGACTTCACCAGCGGCGGGGAAGCCGCCCCCATCCCCACCGAGGGCATC
AGCAAGCCGCTCGCCGGTATCCTCAAGGAGCTCGGGAAGAAGGTTCCCGAGTCCCTCCTG
AAGACGCGTCTCGAGGACAACGGATTCGCCCTCAAGTACATCCCATGGCACCTTGCTAAC
AAAGTCCTGAATGCACACGCTCCAGAATGGTCTGGGGAGGTTCGCAACATTGTCTACTCA
TCTGATGGGAAATCTGTATCTGTTGTCTATCGTGTGACCCTCTATGGAACTGATGCAGAG
ATCTACAGAGAGGCTACTGGAACTGCTTCTGTTGAGGATAAAGGCTATGGAGATCCCGTT
CAGAAGGCTGAAGGAATGGCTTTTCGCCGAGCTTGTGCCCGCCTTGGTCTTGGACTTCAT
CTCTATCATGAAGATATGTCATAGATGCTTACTGATTATTGTTTGTGGTCTGGGCTTCTG
CTTCATGTCTCTTAGTACGCAGACACTTGTCGTTCAGTAGGCTACCCTTTTGTGTTGAAC
ATGATATGAATGTGCTGGCATATAAAATTTAGTATTCTAGGTTGTCGTGTGCGTGACTAA
TGTAAGCTACTAAGTTGGTTGCTGTTCTGAATGGCATGGTTATTATGAACCAGCAAGTTT
CATCATCTAAAAAAA

Homology of Contig U35_20481 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g65560.1	189	4e-103	protein\|snRK1-interacting protein 1, putative, expressed
Brachypodium v1_2	Bradi2g56682.1	188	2e-111
Arabidopsis v10	AT1G71310.2	176	3e-67	cobalt ion binding \| chr1:26878717-26879844 REVERSE LENGTH=176