barSeed - Barley Seed Development Database

Probe CUST_27064_PI390587928

Source Contig U35_20483

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27064_PI390587928	Hv_44K_v2	CCGATAGATCGAGCTTAACAAAAATTAGTGTTTGCTTCAGTAAGAGTTTCGCTTTTATCA	1241	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.594	1.770	1.181	0.975	0.538	0.713
Raw	242.856	433.590	246.508	318.456	59.421	89.897

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66218.1	1501	2e-24	13 - 72	100	60 / 60	minus	ABC14227
JLOC1	JLOC1_43617.3	1474	8e-25	1377 - 1436	100	60 / 60	plus
JLOC1	JLOC1_43617.2	1264	8e-25	1167 - 1226	100	60 / 60	plus
JLOC1	JLOC1_43617.1	1361	8e-25	1264 - 1323	100	60 / 60	plus
Harvest21	ABC14227	1317	3e-25	1242 - 1301	100	60 / 60	plus	ABC14227
Harvest35	U35_20483	1317	3e-25	1242 - 1301	100	60 / 60	plus

Contig Sequence (1317 bp)

>U35_20483 1317 Hv_44K_v2
CCATCCCTAGCCACCGCGCAGCCATGTCCGCCGCCACCGCGCTCCGTCCAAGCGAGCCGT
TCCCTCTCCCGAGCGGCGTGTCCCTCGCGCGGCGCCTGAAGCTGCTCCTCTCCTTCTCCC
GCACCGGCCTCTCTGTGAGCCCCGTCGACGAGTGGCAGCTCAAGTCCGCGCTCCTCGCCT
TCCTCCGAAAGCCGCCGCTCTCGCTCTCTCTCCTCCAAGACTCCGACCTGTCCGTCAGCC
GCCTTCCGGACCTGCAGAAGCGCCGCCGGGACGACCCCGTCGCCTCCGGCATCCTCTACG
TCCGCGATCTCTCCTTCCTCCGCCCAAGCAACCGCGCAGGAGGCGACGAAGCCGAGAAGA
TGACCCCAGAGCAGGAGGAGAATAAGTACTCACAGTGGCGGAGCTCCCTGGTCCAGAAGC
TAGATGGCATCGACCTCAACCTTAAGGGGGTTATGTACCGAATGAGTGTCGAGATCCCCG
CCTCAGATGACTTCACGGCGATGAAGAAGTCATGGGAGGAATTTTACGCCTCCGAGCTCT
TTAGTACCAGGAATCCGGTGAGGAAGATAGCAAAAAGACCAGACACAATTCTTGTGAGGG
GTGTGCCATCCAGGTGGTTTGCGGAGACGAGGATATCGTCGAAGGCATCCACATTGGTCA
CCCACACTATCTTCTCAGCTCTTGGTAAAATAAGGACCTTAAATATTTCTAATGATGATG
AATTAGAAGAAAAAAAAGATGAGACTAATAAGGGTCTCATATCTGGACTCAATTGTAAGG
TGTGGGTGCAATTAGAGAGTTATGATGACTTCCATAATGCAATGAAGGCATTATGTGGAC
GGTCATTGGAGAAGGAAGGATCACGGTTAAAAGTGAACTATGATGTGACTTGGGATAGGG
AAGGTTTCTTTCGTAATGGACAATACGAGCTTGCACATAACAAACTAGAAGAAAGAGATG
CACCAGTACATGGAAGGAAGAAACATTACACCTCGCGAATCGAGTCAGATCATAGGAAAA
GATTCAGGGATTGACGGCGCAAAGGACATGATAGATTGTGAAATTACAAGTCACAAGGAG
AAGGAAAATTGGTTGTATTGTGCGGGCTGTACCATTGTGATGTTCACTATTTGTGTTGTC
TCCTTTTATTTCTCATTATTTTAGTCTAACAGTAAAATCATTCTGGCCGAGTCTCTGATT
TGTACTGTTATTACTGCTATTGTGGTCGTACCTTGTTGATACCGATAGATCGAGCTTAAC
AAAAATTAGTGTTTGCTTCAGTAAGAGTTTCGCTTTTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_20483 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g39730.2	341	2e-171	protein\|ZCW7, putative, expressed
Brachypodium v1_2	Bradi1g23140.1	340	0.0
Arabidopsis v10	AT1G59600.1	324	2e-88	\| Symbols: ZCW7 \| ZCW7 \| chr1:21889927-21891910 REVERSE LENGTH=324