- Probe CUST_27057_PI390587928
- Source Contig U35_32460
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27057_PI390587928 | Hv_44K_v2 | AGATGAGAGAACACATAGATGGAAGGACTTCTTGGACAGGTTGGCTGATTCTGCAGACTT | 326 | GeneList: sienna3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.725 | 1.869 | 1.128 | 0.757 | 0.257 | 0.505 |
| Raw | 146.118 | 99.935 | 60.420 | 53.475 | 7.328 | 16.526 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372875 | 3541 | 2e-24 | 413 - 472 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_39737.3 | 1689 | 2e-24 | 343 - 402 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_39737.2 | 1568 | 2e-24 | 359 - 418 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_39737.4 | 1525 | 2e-24 | 221 - 280 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_39737.1 | 1667 | 2e-24 | 363 - 422 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_25927.1 | 1807 | 8e-25 | 362 - 421 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_32460 | 392 | 3e-25 | 327 - 386 | 100 | 60 / 60 | plus |
Contig Sequence (392 bp)
>U35_32460 392 Hv_44K_v2 AAAAACTTGTGTTGGACTACAAAAATACCTCTCCTTTCCTCGTTCACGAAATCTTCATCG TTCAAAATCCGGGTCAAACCCAGCCGGATTTAATCGTCCTGATCTCCTCCTCGACCTCGT CCTCCCTCGCGGCGCGGGAGCTGCCTACGAGTCAAACTGAGACCACGACGACCGGCCACG GCCACGGCGCCGGCGCCGGCGCGCGCCGTCGCCATGGGCGCCACGCCCTTCGACTTCGAC CACAAGAGGGACGCTTATGGATTCGCGGTGCGGCCGCAGCATCTGCAGCGTTTCCGCGAG TATGCCAAGATTTACAAGGAAGAGGAAGATGAGAGAACACATAGATGGAAGGACTTCTTG GACAGGTTGGCTGATTCTGCAGACTTGCCCAG
Homology of Contig U35_32460 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |