barSeed - Barley Seed Development Database

Probe CUST_27056_PI390587928

Source Contig U35_32463

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27056_PI390587928	Hv_44K_v2	TTGAGAGAAGAAGTGGAATTTTGCAATGGAAGAATGAGGCGAAAAGCTGTGTCAGCTAAT	362	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.632	1.166	1.362	0.798	0.679	0.576
Raw	120.460	120.887	137.024	112.606	36.193	34.853

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60118.3	1210	2e-24	147 - 206	100	60 / 60	plus	None
MLOC	MLOC_60118.2	2837	2e-24	1574 - 1633	100	60 / 60	plus	None
MLOC	MLOC_60118.1	2856	2e-24	1592 - 1651	100	60 / 60	plus	None
JLOC1	JLOC1_39174.1	2856	8e-25	1592 - 1651	100	60 / 60	plus
Harvest35	U35_32463	446	3e-25	363 - 422	100	60 / 60	plus

Contig Sequence (446 bp)

>U35_32463 446 Hv_44K_v2
TTTCAAACACTGATGACAACAATGCATCTAAGAAACAAGGGAAAGGTAATGATGTTGGTG
TGGCTCTAGTAAAAACTCTTCAGAACACCAAGTACTCCCTTGATGAGAAGCTAGATCAGA
GTTTTATAAATTTCTTCGGCAGACGGCCTGCTGCTCAGTCCGAAGACAGTGACATGACAG
GCAATGCCATTTCTTCAAGACAGAATGACCAAGGAGATGCTAACATTTTGGCACAAGTAG
GTGGTAATAGCCTTAGTAGTGCAGGCACCCTGGAGAGCAACCGGCACTCTTCTTCCGAGT
GCTCTAGTGATAGTGAAGGTGACAATGATGATGACATTCAGCCAAGTGATCTTGGCGTTG
ACTTGAGAGAAGAAGTGGAATTTTGCAATGGAAGAATGAGGCGAAAAGCTGTGTCAGCTA
ATTTTNAGATGATGACGATGATGCTG

Homology of Contig U35_32463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g63330.1	1179	1e-51
Arabidopsis v10	None