barSeed - Barley Seed Development Database

Probe CUST_27051_PI390587928

Source Contig U35_39146

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27051_PI390587928	Hv_44K_v2	GAACGCTGGTAATCGAGACTACATAAAAGCAATAAAATGCATATTGTGTGGTGCAAAAAA	241	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77071.1	1970	9e-22	233 - 287	100	55 / 55	minus	ABC04658 ABC35146
MLOC	AK249880.1	2223	3e-21	2170 - 2223	100	54 / 54	plus	ABC04658 ABC35146
JLOC1	JLOC1_51402.3	1494	5e-22	1189 - 1243	100	55 / 55	plus
JLOC1	JLOC1_51402.2	1634	5e-22	1329 - 1383	100	55 / 55	plus
JLOC1	JLOC1_51402.1	1414	5e-22	1109 - 1163	100	55 / 55	plus
Harvest21	ABC35146	312	3e-25	242 - 301	100	60 / 60	plus	ABC35146
Harvest21	ABC04658	2214	3e-25	2142 - 2201	100	60 / 60	plus	ABC04658
Harvest35	U35_39146	312	3e-25	242 - 301	100	60 / 60	plus
Harvest35	U35_16083	2213	1e-23	2142 - 2202	98	60 / 61	plus

Contig Sequence (312 bp)

>U35_39146 312 Hv_44K_v2
GCAGATCCAACCTGGTGATCCCTATGTCGTAGAGCTGGCTTCTATGGTCTTTATCCTAGC
TTTGCCCATAAATGTCCTCTTATACTTCTTTTAAGTAATTCTAATTCTCTGTTCTTCATG
TGCAGCCTGAGATTGATAAAGTATACAAAACATTGGAGGGTCAGAGGGCTGCGAGCAAAG
CAAAGTAAAGCTATGTGTTTTGTTAGGTCACATGCCGGAGTACTATTGTAAATCTACTAT
TGAACGCTGGTAATCGAGACTACATAAAAGCAATAAAATGCATATTGTGTGGTGCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_39146 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None