barSeed - Barley Seed Development Database

Probe CUST_27046_PI390587928

Source Contig U35_15191

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27046_PI390587928	Hv_44K_v2	TTTGAAAGCGTGCCATTTTTTGACTTAAAGAACCAGTCGTCACCGTGGGTTCTGAGGGAA	1120	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252806.1	1877	2e-24	1139 - 1198	100	60 / 60	plus	ABC02736 ABC02737 ABC02738
MLOC	MLOC_32633.2	879	2e-24	569 - 628	100	60 / 60	minus	ABC02736 ABC02737 ABC02738
JLOC1	JLOC1_21251.1	2114	8e-25	1330 - 1389	100	60 / 60	plus
Harvest21	ABC43828	308	3e-25	60 - 119	100	60 / 60	plus
Harvest21	ABC02737	1850	3e-25	1121 - 1180	100	60 / 60	plus	ABC02737
Harvest35	U35_15191	1835	3e-25	1121 - 1180	100	60 / 60	plus
Harvest35	U35_15189	1078	2e-22	426 - 483	98	57 / 58	plus

Contig Sequence (1835 bp)

>U35_15191 1835 Hv_44K_v2
GAGCTAACGGTCTATAGGCGAGATGAGCTGGTTGCCGGCGACGAGGGCGCTCTCCTGCGT
CGTCCTTCTCCTCCTCCTTGTCGTCGCCGTCGCGCCTCCGGCGTCCGCGGCGGCGATCAC
CAGGGGCGACTTCCCCACGGGGTTCGTCTTCGGCACCGGCTCCTCCGCTTACCAGATTGA
AGGTGCAGTTGCAGAGGACGGAAGAAAACCCAGCATCTGGGACACATTCACACACTCAGG
CTACTCGCCCGGCGGAGCCACTGCTGATGTGACTGCAGATCAATATCATAAGTACAAGGA
AGATGTAAAGCTTTTGAGTGAGATGGGCGTTGATGCATACCGATTTTCCATTGCCTGGCC
TCGGCTCATTCCTGATGGCCGAGGAGCTGTCAATGCAAAGGGACTGGAGTACTACAACAA
CCTTATCAATGAACTCCTACGTCATGGAATTCAGCCTCACGTAACAGTATATCATTTCGA
CTTACCTCAGGCTCTTCAAGACGAATACAACGGGATGCTTAGTCGTAAATTCATAGATGA
CTACACGGTGTATGCAGATGTGTGCTTCAAGAATTTTGGTGACAGGGTGAAATATTGGAG
CACTCTGAATGAGCCAAACATTGAGCCAATTGGCGGATACGACCAAGGATTCTTTCCACC
ACAGCGATGCTCATTGCCCTTCGGCATCAGTTGCAACAATGGCAACTCTACCACAGAGCC
CTATATAGTAACTCACCATCTTCTGCTTGCACATGCTTCGGCAGTGTCCCTGTATAAAGA
GAAGTACCAGGACAAGCAAGGTGGAAAAATTGGACTCACATTGCTCGGTTCGTGGAACAA
GCCCGCGACACAAACACCTGAGGATATAGCAGCAGCTGCAAGGATGAATGACTTCCACAT
TGGGTGGTATATGCATCCTTTGGTGCATGGAGATTATCCCCCAGTGATGAGGAAGAATGT
TGGGTCCAGGCTACCATCTTTCACTGCTGAAGAGCTGAAGAGAGTGCTTGGGTCTTTTGA
TTTTGTCGGATTTAACCACTACGCCGCCTCATATGTGAAGGCTGATCTTAGCAAGCTGGA
TCAGAAGCTGAGAGATTACATGGGTGATGCAGCAGTGAGATTTGAAAGCGTGCCATTTTT
TGACTTAAAGAACCAGTCGTCACCGTGGGTTCTGAGGGAAATGCTGGAGCATCTCCAGGT
CAAATACAAGAACCCTGTGGTCATGATCCACGAGAACGGAGCTGCCAGCGTGGCTGATCC
CTCTGGTGATAAGGCCCTCGACGACGAGTTCAGGTCGCGGTACCTGCAGGATTACATCGA
GGCGACCCTCCAATCCAGCAGGAACGGGTCGAACGTGCAGGGCTACTTCGTGTGGTCATT
CGTGGACATGTTCGAATTCCTCTTTGGCTACCGCATGGGCTTCGGCCTCTATGGCGTCGA
CTTCAACTCCGAGGAGAGGACGAGGTACCGGAGGCACTCCGCCAAGTGGTATGCCGGCTT
CCTCCGTGGCGGCGAGCTCAGGCCGGTGGCTGTCCCCGGCCAGGCGTATTCCCAGTGATC
TTGGCACGCATTTTCAGGCTTCTGTAGCCCACGAATAGGAGGATGGATGACGAATAAGCC
TGGGAGGATGATTGGTTCTTGTTTTTGGATGGGAGTTCAATTTTGCTTGGGCAGTAGGAT
TTATACATCTGCTTCTTTGGAGTCGATTGTTCCTTATACATTATAAATGTTCATCCTGAT
GTATGTGCTGAAAATATTAATATATTTCGATATGTAAAAAAAAAAAAAAAAAATGTATAC
ATGGTGTCGGATTTGGTAGTCCGAGATTGAAATCA

Homology of Contig U35_15191 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33680.1	524	0.0	protein\|Os9bglu31 - beta-glucosidase, dhurrinase, similar to G. max hydroxyisourate hydrolase, expressed
Brachypodium v1_2	Bradi4g34927.1	516	0.0
Arabidopsis v10	AT1G02850.4	521	2e-158	\| Symbols: BGLU11 \| beta glucosidase 11 \| chr1:630569-633085 FORWARD LENGTH=521