barSeed - Barley Seed Development Database

Probe CUST_27045_PI390587928

Source Contig U35_15192

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27045_PI390587928	Hv_44K_v2	TTTAAACAGTATCTGTGAAGTCCTAATTTTGGTTTCAATGGCATATACATCACATGGGCT	1997	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358266	2436	2e-24	2335 - 2394	100	60 / 60	plus	ABC02736 ABC02737 ABC02738
MLOC	MLOC_15992.3	4185	2e-24	2901 - 2960	100	60 / 60	minus	ABC02736 ABC02737 ABC02738
MLOC	MLOC_15992.4	4307	2e-24	2901 - 2960	100	60 / 60	minus	ABC02736 ABC02737 ABC02738
MLOC	MLOC_15992.5	4301	2e-24	2901 - 2960	100	60 / 60	minus	ABC02736 ABC02737 ABC02738
MLOC	MLOC_15992.2	5190	2e-24	2903 - 2962	100	60 / 60	minus	ABC02736 ABC02737 ABC02738
MLOC	MLOC_15992.6	2845	2e-24	652 - 711	100	60 / 60	minus	ABC02736 ABC02737 ABC02738
MLOC	MLOC_15992.1	4772	2e-24	2903 - 2962	100	60 / 60	minus	ABC02736 ABC02737 ABC02738
JLOC1	JLOC1_10995.1	2226	8e-25	59 - 118	100	60 / 60	minus
JLOC1	JLOC1_10996.1	2524	8e-25	2222 - 2281	100	60 / 60	plus
Harvest35	U35_15192	2057	3e-25	1998 - 2057	100	60 / 60	plus

Contig Sequence (2057 bp)

>U35_15192 2057 Hv_44K_v2
GCACGTACTCACGCACTCGCAGCCATGCCATTCGCAAGCTTCAGCGGCCGTAGACAGAGC
ACCGGCCGGGAACGGCGTATAAATTAAGAGACCATCACCCACCAGGCCACCACCACCGCC
GCCTAGACAGCGCGCAGTGGCCGGCGAATCGACGGAGCTAGCAGCAGCAGCCTGTATATA
GGCGATGAGGACGCCGGCGACGACGACGCTCCCCTGCGTCCTTGTCCTTCTCGTCGCCGT
CGCGTCCCGGGCGTCTGCGGCGGCGATCACCAAGGGCGACTTCCCCCCGGGCTTCGTCTT
CGGCACCGGCTCCTCCGCTTACCAGATTGAAGGTGCGGTTGCAGAGGATGGAAGAAAACC
CAGCATCTGGGACACATTCACACACTCAGGCTACTCTGCCGATGGTGCCACTGCTGATGT
GACTGCAGATCAGTATCATAAGTACAAGGAAGATGTAAAGCTTTTGAGTGAGATGGGCGT
CGACGCATACAGATTTTCCATTGCCTGGCCTCGCCTTATTCCTGATGGCCGAGGAGCTGT
CAATCCGAAGGGACTGCAGTACTACAATAACCTTATCAATGAACTCCTGAGTCATGGAAT
TCAGCCTCACGTGACGATATACCATTTCGACTTCCCTCAGGCTCTTCAAGATGAATACCA
TGGGATGCTTAGTCGTAAATTCATAGATGACTACACAGCGTATGCAGATGTGTGCTTCAA
GAACTTTGGCGACAGGGTGAAATACTGGAGCACACTGAATGAGCCAAACATTGAGCCCAT
TGGCGGATACGATGTAGGATTCCTTCCACCAAGGCGATGCTCATCCCCCTTCGGCATAAG
TTGCGACAACGGCAACTCTACCACAGAGCCCTACATAGTAGCTCACCATCTTCTGCTTGC
ACATGCCTCAGCAGCGTCCCTGTATAAAGAGAAGTATCAGGCCATGCAAGGAGGAAAAAT
TGGACTCACATTGCTCGGCTGGTGGAGCGAGCCTGCGACACAAACACCCGAGGATATAGC
AGCAGCTGCAAGGATGAATGATTTCCACATTGGATGGTATATGCATCCATTGGTGCATGG
AGACTACCCTCCGGTGATGAGGAAGAATGTTGGGTCCAGGCTACCATCTTTCACTGCTGA
GGAGCTGAAGAGAGTACTTGGGTCTTTTGATTTTGTAGGATTTAACCACTACGGTGCCGC
ATATATGAAGGCTGATCTTAGCAAACTGGATCAGAAGCTGAGAGATTACATGGGTGATGC
AGCCGTGAAATATGACACATTGCCATTTTTGAACTCAAAGAACCAGCTCCTGTTTGGACT
GAAAACGGGTTTTGGGTCATCAACACCGTGGTCTATGAGGAAAATACTGGAGCATCTCCA
GGTCGAATACAAGAATCCTGTGGTCATGATCCATGAGAACGGAGCTGCCAGCATTGCTGA
TCCCTCCAGTGGGAACGCCCCTGACGACGAATTCAGATTGCAGTACCTGCAGGATTACAT
TGAGGCGACTCTCCAATCCAGCAGGAATGGGTCGAACGTGCAGGGCTACTTTGTGTGGTC
ATTCCTGGACGTGTTCGAGTACCTCTTCGGCTACCGCATGGGCTTTGGCCTCTACAGTGT
GGACTTCAGCTCCATGGAGAGGACGAGGTACCAGAGGCATTCTGCCAAGTGGTTCGCCGG
CTTCCTCCATGGTGGTGAGCTCAGGCCGGTGGCTCTGCCCGGCAAGGCCTATTCTCAATG
ATCTTGACACTTCTTCAGGCCTCCGTAGCCCACAAAGAGAAGGATGCATGAATAAGCCCG
GATAGTTGGGTGTTATTTTTGGATGGAAGTTGAATTTAGCTTGGGCAGCAGGTTTTACAG
GTCTCTGCTTCACTGGATTGGATTGTTCCTAATCCTATGTATATGTTTATGTCGATGTAT
ATGCTGAAAATATTAATACAGTGCTACAAAAAATTTCGGGTTAGTCATTAGTCTGTGAGT
GAGATCACATACCTGAATTTAAACAGTATCTGTGAAGTCCTAATTTTGGTTTCAATGGCA
TATACATCACATGGGCT

Homology of Contig U35_15192 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g33680.1	524	0.0	protein\|Os9bglu31 - beta-glucosidase, dhurrinase, similar to G. max hydroxyisourate hydrolase, expressed
Brachypodium v1_2	Bradi4g34927.1	516	0.0
Arabidopsis v10	AT1G02850.4	521	2e-166	\| Symbols: BGLU11 \| beta glucosidase 11 \| chr1:630569-633085 FORWARD LENGTH=521