barSeed - Barley Seed Development Database

Probe CUST_27037_PI390587928

Source Contig U35_15199

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27037_PI390587928	Hv_44K_v2	ATAGGATGGTATGTCCTATAGTATCCTACAGAATTGGAAAGAATGTTTGATAGCACAGAA	1621	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38535.7	1701	2e-24	1624 - 1683	100	60 / 60	plus	ABC02943 ABC02946
MLOC	MLOC_38535.5	4207	2e-24	4148 - 4207	100	60 / 60	plus	ABC02943 ABC02946 ABC16607
MLOC	MLOC_38535.6	4334	2e-24	4269 - 4328	100	60 / 60	plus	ABC02943 ABC02946 ABC16607
MLOC	MLOC_38535.2	4328	3e-22	4273 - 4328	100	56 / 56	plus	ABC02943 ABC02946 ABC16607
MLOC	MLOC_38535.3	4172	3e-22	4117 - 4172	100	56 / 56	plus	ABC02943 ABC02946 ABC16607
JLOC1	JLOC1_25063.3	1844	8e-25	1707 - 1766	100	60 / 60	plus
JLOC1	JLOC1_25063.2	4241	8e-25	4104 - 4163	100	60 / 60	plus
JLOC1	JLOC1_25063.1	4194	8e-25	4057 - 4116	100	60 / 60	plus
Harvest21	ABC02946	1706	3e-25	1593 - 1652	100	60 / 60	plus	ABC02946
Harvest35	U35_15199	1735	3e-25	1622 - 1681	100	60 / 60	plus

Contig Sequence (1735 bp)

>U35_15199 1735 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACCATCCTTGTTTCCTCCTTCCTCCTCCGCGCCCTTGCT
CGCAATTTCGTCCTCATCCGTCGGTCCATCCATTGAGGGAGGAGATGGCGTCCGAGAAGC
ACTTCAAGTACGTCATCCTCGGCGGCGGCGTCGCGGCGGGATACGCCGCGAGGGAGTTCG
GAAAGCAGGGCGTCCAGCCCGGGGAGCTCGCCATCATCTCCAAGGAGTCCGTGGCTCCCT
ATGAGCGTCCTGCACTCAGCAAGGGCTACCTCTTTCCCCAGAATGCCGCGAGGCTTCCAG
GATTCCACACCTGCGTCGGGAGCGGCGGGGAGAAGCTCTTGCCCGAATGGTACACACAAA
AAGGCATTGAGCTGATCCTCAGCACGGAAATTGTCAAGGCTGATCTTGCCTCTAAGACAT
TGACCAGTGCAGCTGGAGCAACCTTCACCTATGAGACCTTGCTCATTGCTACTGGCTCCT
CGACCATAAAGCTCACTGACTTTGGCGTCCAAGGAGCAGAATCAAACAACATATTGTATC
TACGGGAAATTGATGACGCCGACAAGTTGGTCGCAGCTATGCAGGCAAAGAAGGATGGAA
AGGCCGTCGTTGTTGGAGGTGGCTACATAGGACTTGAGCTCAGCGCAGCACTGAAGATCA
ACAATTTTGATGTCACCATGGTGTACCCAGAGCCGTGGTGCATGCCCCGTCTCTTCACTG
CCGGCATTGCTCATTTCTATGAGGGTTACTACGCTAGCAAAGGGATCAATATCGTGAAGG
GTACTGTGGCTAGTGGTTTTGATGCCGATGCCAATGGAGATGTTAGTGTCGTGAAGCTGA
AGGATGGAAGAGTACTCGATGCCGACATGGTCATCGTTGGAGTCGGTGGCAGGCCACTGA
CAGGCCTCTTCAAAGGCCAAGTTGATGAGGAGAAAGGTGGACTCAAGACTGACGCATTCT
TCGAAACAAGCGTCGCTGGTGTATATGCCATCGGTGATGTGGCGACTTTCCCCATGAAGC
TGTACGACGAGCCGAGGAGAGTGGAGCACGTCGACCATGCTCGGAAATCGGCCGAGCAGG
CAGTAAAGGCTATCAAGGCCAAGGAGTCCGGTGAGTCCGTGGCGGAGTACGACTACCTGC
CCTACTTCTACTCTAGGTCGTTCGACGTCGCGTGGCAGTTCTACGGCGACAACGTTGGCG
AGACGGTGCTGTTCGGGGACAACGACCCAGCTGCGGCCAAGCCCAAGTTCGGCACCTACT
GGGTCAAGGACGGCAAGGTCATCGGCGTGTTCCTAGAGGGCGGCTCCGCCGACGAGAATC
AGGCCATCGCCAAGGTCGCCAGGGCCCAGCCGCCGGTGGCCGACGTGGAGGCGCTCGCCA
AGGAAGGCCTTGATTTCGCCACAAAGATCTGAAGATTCCTCTATTATCTATCTACGCGTG
TAAATCTTGTGTTTGTCCCTCCCCTGCCGATGCTTCCTAGTTCCTAGCTCAGAAACGTGA
TTCGATTTCTTTTTTTCCTTTTGGAGTTTGATGGTGTTGCTGTGACCACTGTGGCAGGAT
TTCAATAAATTTAGGGCCTTTTGATTCGCAAAAAAAAAAAAAAAAAAAAAAATATGCAGA
AATAGGATGGTATGTCCTATAGTATCCTACAGAATTGGAAAGAATGTTTGATAGCACAGA
AAAAACAACAAAATTTTAGAAAAAGTTTTTTTCGTGAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_15199 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g44340.1	436	protein\|monodehydroascorbate reductase, putative, expressed
Brachypodium v1_2	Bradi3g42760.1	436
Arabidopsis v10	AT5G03630.1	435	\| Symbols: ATMDAR2 \| Pyridine nucleotide-disulphide oxidoreductase family protein \| chr5:922378-924616 REVERSE LENGTH=435