barSeed - Barley Seed Development Database

Probe CUST_27034_PI390587928

Source Contig U35_27170

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27034_PI390587928	Hv_44K_v2	TTCGCGAAAACGATATGATCTCCCATGTCGAATACATGCATGTTTGTCTTGCATAAAAAA	419	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66442.1	2686	9e-22	1087 - 1141	100	55 / 55	plus	ABC07905 ABC07906 ABC48566
Harvest21	ABC48566	490	3e-25	12 - 71	100	60 / 60	minus	ABC48566
Harvest35	U35_27170	490	3e-25	420 - 479	100	60 / 60	plus

Contig Sequence (490 bp)

>U35_27170 490 Hv_44K_v2
CGAGGTGTGCGAGGCAGCCATGCCACCTGGGTACTACCCTGGCTTCGCTGACGGCACTCT
GGCGCCTGAGCACTGCTCCGCCGAGGTCGGCACCGGCGGCGACTACGTGAACACGCTACC
ATCTGGGTACGGCTACCCCATGGGCATGGGCGACAACTTCACCAATCTGGAGAGCAACTA
CACGGCGGCGCATTGGCAGGCCGAGGCGTTCCAGCGCTCCGACACCAGCACCAGCACCGG
CACCGGCACCGGCAAGCTGCTGTCAGCTGCATCATCGCCTCGTTATCTCTTCTGAACATC
TTAGGTCTCAGCAATCGAAGTAGTTTTGCGGTTTTTTGCATATTTCATCTGTGCATCAGG
GCCTATGATTTTGTACGGAATTCGAAACCTCATATACAATCTGTTACTATGTGAGAATTT
TCGCGAAAACGATATGATCTCCCATGTCGAATACATGCATGTTTGTCTTGCATAAAAAAA
AAAAAAAAAA

Homology of Contig U35_27170 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None