barSeed - Barley Seed Development Database

Probe CUST_27028_PI390587928

Source Contig U35_27174

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27028_PI390587928	Hv_44K_v2	TAATTCTGTGATGGTCGTACATGTATGACTTCCGCATAAGAAAGAAACTTGCTCAAAAAA	521	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.588	0.840	0.418	1.986	1.296	1.203
Raw	4.345	7.715	4.329	45.172	9.853	10.171

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC24065	592	3e-25	522 - 581	100	60 / 60	plus	ABC24065
Harvest35	U35_27174	592	3e-25	522 - 581	100	60 / 60	plus

Contig Sequence (592 bp)

>U35_27174 592 Hv_44K_v2
GCGCTTCATATCCATTCAAGGGGGCAAAATTTTCTCTCGCGTCGTACCGCTGAAGGGAAC
CGCCGCGCCATCCGCCAAGGCTTAAACATGTCGATGGAGGCTGGCCGCACAATCCCCAAG
TTCGGCGCCTGGGACGTGAACAACCCGGCCTCCGCCGATGGGTTCACTGTTATCTTCAGC
AAGGCCAGGGACGATAAGAAGGCCCCCGTCAACGCGCACAAGGCCAACAGGTCCGCCGAC
AGCAAGGACGCCAGGCCCGACACCAAGATGAACACCTACAACAACTCCAGGGCCAACACT
TCGAAGAAATGGTTCTGCTGCGTGTCGCCGAGCCCCACGCAGCCTTGAGCCAGGAGGAGA
GGAGGTGATGGAGCGGAGTGTCGTGCGAACGCGAACGCGATGGGGGATGGAGGAGAGGAG
TGTCAATGCCGCTGCTTCGTTTATAAACAAACGTACTACTACCGTACATACACAAAAACT
TCGCCACTTCGGGGATGAGATAAGATGAGACGATGTTGATGTAATTCTGTGATGGTCGTA
CATGTATGACTTCCGCATAAGAAAGAAACTTGCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_27174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None