- Probe CUST_27024_PI390587928
- Source Contig U35_27178
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_27024_PI390587928 | Hv_44K_v2 | GACAGGATTAGCGTCCTTCATGAGAGCATACTCCATTATATCATGTCCTTCATGCCAGCA | 618 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.907 | 1.119 | 1.873 | 1.386 | 0.557 | 0.519 |
| Raw | 393.325 | 655.606 | 1075.537 | 1220.832 | 176.797 | 183.714 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_10982.2 | 2069 | 2e-24 | 792 - 851 | 100 | 60 / 60 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.4 | 2108 | 2e-24 | 725 - 784 | 100 | 60 / 60 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.6 | 1709 | 2e-24 | 432 - 491 | 100 | 60 / 60 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.5 | 1764 | 2e-24 | 546 - 605 | 100 | 60 / 60 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.1 | 2542 | 2e-24 | 1184 - 1243 | 100 | 60 / 60 | plus | ABC25098 ABC40857 |
| MLOC | MLOC_10982.3 | 1385 | 2e-24 | 724 - 783 | 100 | 60 / 60 | plus | ABC25098 |
| JLOC1 | JLOC1_7230.2 | 1975 | 8e-25 | 633 - 692 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_7230.1 | 1884 | 8e-25 | 642 - 701 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC24375 | 680 | 3e-25 | 619 - 678 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_27178 | 681 | 3e-25 | 619 - 678 | 100 | 60 / 60 | plus |
Contig Sequence (681 bp)
>U35_27178 681 Hv_44K_v2 AGATAGTCCATCGGTGAGATGATATTTAGCCGAAACATGTACTCCCTCCGTCCCGAATTA AGTGATGCGGAGGGAGAGCTAAGCTAGTACAAATTTGTATACAACTGGCGTCAGTTAAAT CGGGACAGAGGTAGTATGAGACAAAGAGTAGGGTTGAGAAGCTTGAGAAATTGTATGCAA ACATGGCCTTGCAAAAAGAACCGAAGATCAGAGGTTCTGATGCAAGTACTGTCACCAGAC GAGCCCGAGACATTGACTGATCTTCTGAGTGTTGCTGTCAGATTAGAGAGTATGATTTTC GTAGTAGCTGTTAACGAGGTTGATTATAATTATAAGCTGTATAAGAGAATGGATCATTTA GAGGACATTTTATCAGATAATCATTTTGAGGATATATCATCAGATGATCATTTTGAGGAC ATCTCATCAGATGATCATTTCGAGGACATTCCATCAGATGATCAAATGTTTGGACCCTCA ACTGCGACGCTTCTGCGAGGAATTTTTAGTGATCGACAGAGTCAAAGCATTCAGGTACAG AGCAACCTCCAGAGGGTGCTATCTAGTGGTAATACAAAAGCAACAGGAAATGAAGAGAAG CCTTGCTGTGATGACAATGACAGGATTAGCGTCCTTCATGAGAGCATACTCCATTATATC ATGTCCTTCATGCCAGCACAG
Homology of Contig U35_27178 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |