barSeed - Barley Seed Development Database

Probe CUST_27023_PI390587928

Source Contig U35_39150

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27023_PI390587928	Hv_44K_v2	TGCGCAGCTGGCCCAGCGCCGCCCCTGACGCCCTCACCTACAACGTCGCCATCAAGATGT	38	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.140	1.267	0.991	0.645	0.961	0.994
Raw	84.095	132.098	99.375	93.332	49.270	59.281

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75411.2	2770	2e-24	1920 - 1979	100	60 / 60	minus	ABC29937
MLOC	MLOC_75411.1	4632	2e-24	3829 - 3888	100	60 / 60	minus	ABC29937
JLOC1	JLOC1_50306.1	4647	8e-25	3881 - 3940	100	60 / 60	minus
Harvest21	ABC35150	284	3e-25	39 - 98	100	60 / 60	minus
Harvest35	U35_39150	284	3e-25	39 - 98	100	60 / 60	minus

Contig Sequence (284 bp)

>U35_39150 284 Hv_44K_v2
CACGCGCGCGACGAGGTCCCGGCGCCCGGCGCGCGCGCACATCTTGATGGCGACGTTGTA
GGTGAGGGCGTCAGGGGCGGCGCTGGGCCAGCTGCGCATCTCGTCGAACAGCTGGCGGAA
GCGGCGGCAATCACCGGCGTCGGCGCAGGCGCTGAGCACGGCGTTGAACGCGGCCGTGTC
GGGGAGCGCGAAGGACGGCGAGGCGGAGTCCGGAGCGCGACGGAGGTGGTGGAGGACGGC
GTCGAAGAGGCGGAGCGCGTGGGCGGGGCGGAGACGGGAGATGG

Homology of Contig U35_39150 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None