- Probe CUST_27012_PI390587928
- Source Contig U35_27181
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_27012_PI390587928 | Hv_44K_v2 | GCACTTCAAGCACGCCAACTTCTCCAGCTTCGTCCGGCAGCTCAACACGTACGGCTTCCG | 268 | GeneList: purple MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.337 | 0.725 | 0.989 | 1.191 | 0.975 | 1.279 |
Raw | 70.280 | 238.090 | 279.417 | 508.778 | 154.230 | 221.857 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK366460 | 1172 | 2e-24 | 270 - 329 | 100 | 60 / 60 | plus | ABC15595 |
MLOC | AK368120 | 1208 | 6e-24 | 291 - 349 | 100 | 59 / 59 | plus | ABC15595 |
MLOC | AK369002 | 1080 | 7e-23 | 271 - 330 | 98 | 59 / 60 | plus | ABC06968 ABC15595 |
MLOC | AK363610 | 992 | 7e-23 | 268 - 327 | 98 | 59 / 60 | plus | ABC06968 ABC15595 |
MLOC | MLOC_68417.1 | 1223 | 7e-23 | 900 - 959 | 98 | 59 / 60 | minus | ABC06968 ABC15595 |
JLOC1 | JLOC1_45266.1 | 1139 | 4e-23 | 811 - 870 | 98 | 59 / 60 | minus | |
Harvest21 | ABC15595 | 1092 | 1e-23 | 250 - 309 | 98 | 59 / 60 | plus | ABC15595 |
Harvest35 | U35_27181 | 576 | 3e-25 | 269 - 328 | 100 | 60 / 60 | plus | |
Harvest35 | U35_25114 | 500 | 1e-24 | 284 - 342 | 100 | 59 / 59 | plus | |
Harvest35 | U35_7057 | 1092 | 1e-23 | 250 - 309 | 98 | 59 / 60 | plus |
Contig Sequence (576 bp)
>U35_27181 576 Hv_44K_v2 ACGGCTTCTCCCCCTCCGTCTCCGTCCCAATCCACTCACCGTCACCGCTCCTTCCCCAGC TAGCACCAAGCAAGCATCTCCTGTCCTCTCCCTCCGTCGCCACGATGATGAGCGGCGGCG GCATGGGCTCGGGGGTGGCGCCGTTCGTGGCCAAGACGTACGGGATGGTGGACGACCGTG CCACCGACGCCGTCGTCGCGTGGGGGCCGGCCGGCAACAGCTTCGTCGTCGCCGACCCAT TCGCCTTCTCGGAGATGCTGCTCCCCGCGCACTTCAAGCACGCCAACTTCTCCAGCTTCG TCCGGCAGCTCAACACGTACGGCTTCCGCAAGGTCGACCCGGACCGCTGGGAGTTCGCGC ACGCCTCCTTCCTCCGCGGCCAGACGCACCTCCTCCCCCGCATCGTCCGGCGCCGCCAGG GCAGCGGCAAGCGCGGCAAGGGCGACGGGGCCGACGGCGCCGGAGCGGACGGCGACGAGG AGGATGACAGCGGCGCGACGGCGCTGGCCATGGAGGTGGTCCGGCTGAGGAACGAGCAGA GAGCGACGGAGGAGCGCGTGGCGGACATGTGGCGCC
Homology of Contig U35_27181 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | LOC_Os02g13800.1 | 299 | 2e-56 | protein|HSF-type DNA-binding domain containing protein, expressed |
Brachypodium v1_2 | Bradi3g08870.1 | 315 | 7e-56 | |
Arabidopsis v10 | None |