barSeed - Barley Seed Development Database

Probe CUST_27000_PI390587928

Source Contig U35_39167

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_27000_PI390587928	Hv_44K_v2	GGCGTCCGTCATCCTCGCGGGCGCCCTGCTCATCCCGGACACTCCCAGCAGCCTCATCGT	155	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367467	1883	2e-24	727 - 786	100	60 / 60	plus	ABC46551
MLOC	MLOC_41229.1	1037	2e-24	20 - 79	100	60 / 60	minus	None
JLOC1	JLOC1_26897.1	1322	8e-25	17 - 76	100	60 / 60	minus
Harvest21	ABC35173	275	3e-25	156 - 215	100	60 / 60	plus
Harvest35	U35_39167	275	3e-25	156 - 215	100	60 / 60	plus

Contig Sequence (275 bp)

>U35_39167 275 Hv_44K_v2
GCGGAGACGGCGCCGGCCAAGTGGAGGGGCGCCTTCACCACGGGGTTCCAGCTCTTCCTC
GGCATCGGCAACCTCGCGGCCAACCTGACAAACTACGGCGCCGCGCGCATCCCGCGCTGG
GGCTGGCGGCTCTCCCTCGGCCTGGCGGCGGTGCCGGCGTCCGTCATCCTCGCGGGCGCC
CTGCTCATCCCGGACACTCCCAGCAGCCTCATCGTGCGCGGCCGGGCGGAGCAGGCGCGC
GCCGCGCTCCGGCGCGTCCGCGGCCCCAAGGCCGA

Homology of Contig U35_39167 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g12070.1	509	1e-52
Arabidopsis v10	None