barSeed - Barley Seed Development Database

Probe CUST_269_PI390587928

Source Contig U35_20066

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_269_PI390587928	Hv_44K_v2	TAGGTTACTACTGTTTATGGATGCTAATCAAGTTGCACTCCCTTACACTGGGCTGCTATA	533	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251305.1	1927	2e-24	579 - 638	100	60 / 60	plus	ABC11822 ABC12247
Harvest21	ABC12248	944	3e-25	534 - 593	100	60 / 60	plus
Harvest35	U35_20066	944	3e-25	534 - 593	100	60 / 60	plus

Contig Sequence (944 bp)

>U35_20066 944 Hv_44K_v2
CATGTCGTCGTCATCCCGCGTCGGAGAGATCGAGGTTGTGGTGGCCGACGGCGGAGCCAG
GAAGGCGGCGGAGGAGGAGAAACAGCCGGACCCCGTGGTGAACGTCTACTCGGCCGCGGC
GTACGGGGATCTGGAGCGACTGCGGCGGTTCGTGGAGCTTGACGGCGCCGACGCGTCGCT
CGCCGCGCCTGACGGCAACGGCTATCACGCTCTCCAGTGGGCCGCGCTCAATAACTACCC
CCACGTCGCGCTCTACATCATCGAGCATGGGGGGGACGTGAACGCGGAAGACCATTCGCA
GCAGACAGCGCTGCACTGGGCGGCGGTGCGCGGGGCCACGGCCACGGCCGATGTGCTGCT
GGAGAACGGCGCGAGGCTAGAGGCAGGCGATGTGAACGGCTACCGTCTCAGTATGGCCAA
ACAACATTCTTGCATCACATCGTCTCCAAGTATGGTGCGGACTTTGAAGCTTTGGACAAT
GACGGGAGGAGCTCTTTGCACTGGGCTGCCTACAAGGGAAATGCAGATACAATTAGGTTA
CTACTGTTTATGGATGCTAATCAAGTTGCACTCCCTTACACTGGGCTGCTATAAGAGGAA
GTTTAGAAGTTTGCACCCTTCTTGTACATGCAGGCACCAAGCAGGAACTAACATTGAGGG
ATAGCGGTGGGTTTACTCCTTCGCAACTTGCAGCAGACAAAGGTCAACGGCATCTTTCCA
ATATACTTTCTAATGCTACAAAAGTAAGCTTTGGAGACAAGTACTGCTCAGGGAGGCTGG
GCAAGGTTGGATACGCACCTATCCTGTTTACTTATCTTGTTATCCTCGNGATCCTTTTCC
TGAAATCAATTGTTTTTGCATCTGATTTTTCTAGAATCACTGCTGCTGTTGGTCTTTGGT
CATGGGCTGCTATTTCTCTTGCCTTGGCGTCACAAGTGCTGTTC

Homology of Contig U35_20066 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g34860.1	552	5e-120	protein\|palmitoyltransferase TIP1, putative, expressed
Brachypodium v1_2	Bradi4g16522.1	562	1e-137
Arabidopsis v10	AT2G14255.1	536	8e-82	Ankyrin repeat family protein with DHHC zinc finger domain \| chr2:6036974-6040892 FORWARD LENGTH=536