barSeed - Barley Seed Development Database

Probe CUST_26992_PI390587928

Source Contig U35_41484

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26992_PI390587928	Hv_44K_v2	ATCCGATTCTGTTTTCCTGCTCTCTGAATCTCTTGTTGTTTTCTCGGAGAGGCGGATAGA	409	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51663.1	515	2e-24	266 - 325	100	60 / 60	plus	ABC00041
JLOC1	JLOC1_33024.1	445	8e-25	266 - 325	100	60 / 60	plus
Harvest35	U35_41484	512	3e-25	410 - 469	100	60 / 60	plus
Harvest35	U35_14026	819	8e-21	754 - 808	98	54 / 55	plus

Contig Sequence (512 bp)

>U35_41484 512 Hv_44K_v2
AGACGGACCTCCGTTTCCAGTCCCACGCCGTGCTCGCCCTCCAGGAGGCCGCCGAGGCGT
ACCTCGTGGGGCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCA
TCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCCGCGGGGAGCGCGCCTAGGCGGGAG
CCAGACCAGTCCGGCCCCAGTCCGCCGCATCCATCTGAGGGCGTGCCGCCGTTCGTTCGC
CGGCACCAGTTGATTCGCTTGCCGTTTTAGGTCTTGTTAGGTTTGGTTTGCGGTGATGCA
AACAGATGCTTTCTGTGGAATTGTTGGTTAATGTACTGTTGATCGACCATTATCGATGTA
TGCAATTCTGACGGGACGTACCGTGAAGTTGTTGCCTGCTGTTCTCTGAATCCGATTCTG
TTTTCCTGCTCTCTGAATCTCTTGTTGTTTTCTCGGAGAGGCGGATAGAGGTCCTGCGGC
TGCGGTGCTGTCTGGCCGACGGATTGTCGTCG

Homology of Contig U35_41484 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None