barSeed - Barley Seed Development Database

Probe CUST_26977_PI390587928

Source Contig U35_39175

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26977_PI390587928	Hv_44K_v2	AAGTACAGATAGGCTAGAGACCATTCACTCAGAGGGCGATCATAGATTGTCAGAGATGTG	112	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12819.1	1532	7e-23	788 - 847	98	59 / 60	plus	ABC18244
JLOC1	JLOC1_8617.1	1613	4e-23	798 - 857	98	59 / 60	plus
Harvest21	ABC35193	232	3e-25	113 - 172	100	60 / 60	plus
Harvest35	U35_39175	232	3e-25	113 - 172	100	60 / 60	plus

Contig Sequence (232 bp)

>U35_39175 232 Hv_44K_v2
CCCCGGGCTGCTTGTAGTCGGCACGAGGCTCAAGTGTTACCAAAGCTGCTAAAATGGCTG
CGGGGTTCGCAACTGGCTTGGGTGGACTTTCTCCGAGTGATATCATCAAACGAAGTACAG
ATAGGCTAGAGACCATTCACTCAGAGGGCGATCATAGATTGTCAGAGATGTGCTGCCTTG
CAGTTTCTCAGCGGGGGGGGCTTGGGAAATCAGCCATCTCTTCCGCCAACAA

Homology of Contig U35_39175 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None