barSeed - Barley Seed Development Database

Probe CUST_26975_PI390587928

Source Contig U35_39178

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26975_PI390587928	Hv_44K_v2	CTATGCTTCGGATGGTGAAACAAAATATGCTAAACCAGAAAAGAAGAAACGGAGCAGGAA	520	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.785	1.425	1.123	0.714	0.331	0.341
Raw	590.329	719.133	503.783	495.394	80.955	93.400

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61576.3	848	7e-23	297 - 356	98	59 / 60	plus	None
MLOC	MLOC_61576.1	7202	7e-23	5231 - 5290	98	59 / 60	plus	ABC17285 ABC37269
MLOC	MLOC_61576.2	2810	7e-23	712 - 771	98	59 / 60	plus	ABC17285
MLOC	MLOC_61578.1	8279	7e-23	6596 - 6655	98	59 / 60	plus	ABC17285 ABC37269
JLOC1	JLOC1_40238.1	3544	4e-23	926 - 985	98	59 / 60	plus
Harvest21	ABC35197	641	3e-25	521 - 580	100	60 / 60	plus
Harvest35	U35_39178	641	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (641 bp)

>U35_39178 641 Hv_44K_v2
GAGACGCGCTGCCCCCGTGCCGCCGCGGCCGCTCGCCTCTGCCGCCTCCAGTGACTGGAA
TCCGCCCAGTTCTGTTTGAGTAGCGAGCGAGGAGGGGAGGAGCGCGGAATCAGACTGGAG
GAAAAATCATGACTGGGAACGGAGAGCAGAAGTCTCGCAAGGAGAAGCGGAAGGAAGCGA
GATCGGAGAAGCACAAGCAGCGGTTTCTCTCTTGGGTTCAGCACCAGGGTGGCAAGAGTA
AGAAGACGGCAATGGTGTCCGTGGAACCGAGTCCGGCAGAGGAGGCAAAACCAAAGAAAG
AACCCAAGAAGAGGAGGAGGGAGCCTGAGGATAGCCACAAGTCCAAGTCCAAATTCCAGG
AGTATCTTGAAATGGAGATGGGTGGTGCTGCTGTGGGCAGAGAGGAGGATCTGGAGATGG
AGAGGAAGCTTGCAAAAAAGCTCAGGGTGAAGAAAGGAAAGCTGGGAGGTCCGGATGATG
GTATGGATGATCTTTTTGGGGACCTCGGATTTGGCGGCGACTATGCTTCGGATGGTGAAA
CAAAATATGCTAAACCAGAAAAGAAGAAACGGAGCAGGAAAAATAAGAATGTGAAGGATG
ATGCCATGGAGGAGGACAGTGGGAAAGTAGCGGATGATAGT

Homology of Contig U35_39178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None