barSeed - Barley Seed Development Database

Probe CUST_26965_PI390587928

Source Contig U35_39181

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26965_PI390587928	Hv_44K_v2	GCAAAGAAAATATTGAAAATTACAGGACGGTGAGCCCTCTAGTGGAACAGTTTTCGTAAA	14	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.357	2.807	1.247	0.652	0.541	0.545
Raw	86.849	156.232	61.697	45.943	14.013	16.309

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC35200	667	3e-25	15 - 74	100	60 / 60	minus	ABC35200
Harvest35	U35_39181	667	3e-25	15 - 74	100	60 / 60	minus

Contig Sequence (667 bp)

>U35_39181 667 Hv_44K_v2
TTTTTTTTTTTTTTTTTACGAAAACTGTTCCACTAGAGGGCTCACCGTCCTGTAATTTTC
AATATTTTCTTTGCAAGAGCCCTCAAACTACTTTTGCGGGCTGGCCATTTGCGAGATCTG
CTAGAGATGCTCTTAGATTTGAAAGAAACAAACGTGGTTAACTCCAACCTAGAGAATATG
CTCTTGCAAGCAGAACCATAATATAGCAAGCATAGAAGCCTAGAACCAGTTGAACATAGA
CTTTAACAGATCCCACAATATATCACAAACAGTGCTGATAAAACGTGTCAACACTCAACA
ACTGGCTTTTGATCACAAAAGTCTGTTCACTAACAAAACCACCGATCTAACTGTGGAAAA
CATAGTAGGAACGAAGGCATTGTTCGCTGGACCCACTTCCCAGTCAAGGATTGTATAACT
GAAATTCATCTCAGCTGGTTGGGCTCCTCCTGTCAACTGGTGGACCATGTCCATTATTGG
ATGGTGATATCCTACGCTCATGTCCATCTAGGCTAGGTGATCGACAATCAGATATGTGCT
GCCTCTTGTCCCGAGTAGGTGGAGAGTATGAACCCCTAGGAGAATAGTTATCTCTGTCCC
TGGAGTTCTGTCTAACTGGAGAAGGTTCAGGTGAATAAGAGGGGTAACGGGGCCTTGGGG
ATCTTGA

Homology of Contig U35_39181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None