barSeed - Barley Seed Development Database

Probe CUST_26962_PI390587928

Source Contig U35_39185

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26962_PI390587928	Hv_44K_v2	TATCTTGTAATGAACCATCAGTTTCTTGCGGCGTCAGCTATGTGCTTTGTTTTTAGTAAA	14	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.324	1.607	1.190	0.881	0.405	0.404
Raw	1589.757	3095.656	1937.983	2250.442	368.890	400.213

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_45736.1	460	3e-22	111 - 169	98	58 / 59	plus	ABC31744 ABC46474
JLOC1	JLOC1_29671.1	440	1e-22	110 - 168	98	58 / 59	plus
Harvest21	ABC35205	572	3e-25	15 - 74	100	60 / 60	minus
Harvest21	ABC31744	574	2e-22	90 - 147	98	57 / 58	minus	ABC31744
Harvest35	U35_39185	572	3e-25	15 - 74	100	60 / 60	minus
Harvest35	U35_36619	574	2e-22	90 - 147	98	57 / 58	minus

Contig Sequence (572 bp)

>U35_39185 572 Hv_44K_v2
TTTTTTTTTTTTTTTTTACTAAAAACAAAGCACATAGCTGACGCCGCAAGAAACTGATGG
TTCATTACAAGATAACTCATTCATCCGCTTACACATGGCTACTCACGGGGAAATTATAAG
CTTAGTGGCAAAAGCCAACAACAGTATGAAAAACAAGCACCGGTGCACAAAACCAACTAC
TAAATAGCGATTACCCTTCTAGCCTCCAATTTCTTCTTGATGAAAGTGGCCTCCTACCCC
AAGCATACTCAGCCATACATTGTCAGTGCGCCACATCACCAGTGATCAGTTTTTCTTGTG
GATTGTAGAAACTCATGTATGGAATCAAACCACGAAGCTTTTCTCTCTTCTGCAGCATCT
TCCACCGTAACGTCTTGAGGTTAATCTCGTAGATGTCAAGGCCCATGGTCACGAAAACGA
TATCACTGCCCTCCAGAGATCCAATCAATCTAAATCTTTTATTGGGAATTTGAATGGGGA
GATGGTTATCAAGATCGATGACTGTACGCCTAGTCCATGACCCAATTCCGTCAGAATCGC
CCTGTCTTGACCACAAGTGGAGGGTTACCTTG

Homology of Contig U35_39185 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None