barSeed - Barley Seed Development Database

Probe CUST_26948_PI390587928

Source Contig U35_15203

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26948_PI390587928	Hv_44K_v2	CTTGAGCAAGAGACAAACGTAAAAATTGAACAGCTCAAGCAGCAGGCAGCAAACATCTCC	321	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_28316.1	751	2e-24	244 - 303	100	60 / 60	minus	ABC00251
JLOC1	JLOC1_19011.1	882	8e-25	382 - 441	100	60 / 60	plus
Harvest21	ABC00251	826	3e-25	382 - 441	100	60 / 60	plus	ABC00251
Harvest35	U35_15203	759	3e-25	322 - 381	100	60 / 60	plus
Harvest35	U35_15204	949	6e-22	340 - 393	100	54 / 54	minus

Contig Sequence (759 bp)

>U35_15203 759 Hv_44K_v2
GGGGACGACGGCGAGAGGAGCAGCAGAGGATTAGCTTTTCCCCACGGATCCTTCTCGTCT
TCCACGTGATTCGAGTCGCCTCTCTCCGTCAGCCCAAACATGGACGCAAGCAGGCGCCCA
AGTGGAATCCAGCAATTGCTTGCTGCAGAGCAAGATGCTCAGCAAATTGTAAATGCTGCC
AGGGCTGCTAAAACGGCAAGGCTTAGGAAAGCAAAAGAAGAGGCGGAGAGAGAGATAGCT
GAGTACCGTGCGCAGATGGAGGCTGATTTCCAGAGAAAGCTCACCGAGACCAGCGGTGAC
TCTGGTGCAAATGTCAAACGCCTTGAGCAAGAGACAAACGTAAAAATTGAACAGCTCAAG
CAGCAGGCAGCAAACATCTCCCCAGAGGTGATTCAGATGCTTCTGAGGCACGTCACCACT
GTGAAGAACTAAAGGTTGATGAGTCGGCCCTGCATATTATGATGACAACTTTGTACTATC
TGTTTATTTCTTTGGGAGGTGTTATAAGAAATGGCTTTTGCCACTTCCAGCTGTAATTCC
TTGTTCTTTGTCTTGGAAATAAGCTGCTACAGTTGAGCAGCAGCCATGTCTGATACTACT
TGCTAAACCTTTGGTGATTAGTTCGTAAATTTTGTCGATTTAAACCCTTTTTGTCTCTCC
CTTGTATGGCTACCAGTATATGTATTTTTTATGTGAGATGTATCATTCATAAGAGTAAAT
AAGTTTTAAAAAAAAAAAAAAAAAAAAAAACTTTGGCAA

Homology of Contig U35_15203 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None