barSeed - Barley Seed Development Database

Probe CUST_26941_PI390587928

Source Contig U35_15210

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26941_PI390587928	Hv_44K_v2	CTTGATCCGTGTGTACAGGACCATCAATAAAAACATCATCATTGTTGATTTGCGAAAAAA	940	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72642.1	818	3e-22	683 - 738	100	56 / 56	plus	ABC03111 ABC03113 ABC42362
JLOC1	JLOC1_48324.1	877	1e-22	676 - 731	100	56 / 56	plus
Harvest21	ABC03113	1169	5e-23	1063 - 1118	100	56 / 56	plus	ABC03113
Harvest35	U35_15210	1047	3e-25	941 - 1000	100	60 / 60	plus
Harvest35	U35_15212	1377	5e-23	1063 - 1118	100	56 / 56	plus

Contig Sequence (1047 bp)

>U35_15210 1047 Hv_44K_v2
CTATCCGCGCAGGCACAGCCTAGCACAAATCAAACCCCAAGCCCGAGGCCATCCATCCAT
CCCTGCGCAGAGCTCGATCCGCACAGTGCGAGGCTTGAGATTTTTCCAGGTCTCGGCGAT
TCGGGGGAAGATGGCGCCGTCGTTCCTCGCGATGAAGACGGGCGCGGCGTCCGGCGCGTC
GGAGGCGGCGCAGGCGCTGCTCGAGTCGGACCTGCGGGAGCTGGGCATGGCCGCGCGGAA
GCTCGCCAACCACGCCATCGTCCTCGGCGGCGGCCTCGGCTTCGGCCGCCACTTCCTCAA
GTGGCTCGCCTTCATCGCCGCCGTGTACCTCTTGGTATTGGACCGGACAAACTGGAAGAC
CAACATGCTGACGGGACTCTTGGTCCCTTACATTTTCTTCACCCTGCCCGGCGTGCTTTT
CTCTCTGATAAGGGGAGAGGTTGGTGCCTGGATTGCGTTCATTGTGGTCATCCTGCGGCT
CTTCTTCCCACGTCACTTCCCTGACTGGCTAGAGCTGCCTGGCTCTCTGATTCTTCTTAC
GGTGGTCGCCCCCAGCCTCTTCGCGGACCACTTCAGGAACGACCTCGTCGGCGTCTTCAT
ATGCCTCGCCATCGGGTGCTACCTGCTTCAAGAGCACATCAGGGTGTCAGGAGGCTTCAG
GGAGGCCTTCAGGAAGGCCAATGGCGTATCCAACACCATCGGCATCGTCCTGCTCTTCGT
CTACCCAGTCTGGGTCCTGGTGCTGTGGTTCCTGTAGGACATCTACTGCTATCAGTGTGG
CCATTGATTGGTTTGTGCAGTTCTGTTCGATGTTTGGGGATTCATCGTGTAGACCTTTTC
GATGGTGATTCGGTATCCGGAGTCGATGAACTCTGCGCGCTTGTACCTTCTGATGGACAT
GTTTCGATTTGTTGTAGTTTTGGTGTCAGGTCTTTGTTTCCTTGATCCGTGTGTACAGGA
CCATCAATAAAAACATCATCATTGTTGATTTGCGAAAAAAAAAAAAAAAAATGGACAAAT
AACGCGCATCTGATGTGTTATCTGCTT

Homology of Contig U35_15210 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g55850.1	211	2e-99	protein\|cold acclimation protein WCOR413, putative, expressed
Brachypodium v1_2	Bradi1g07440.1	131	7e-80
Arabidopsis v10	AT2G15970.1	197	7e-74	\| Symbols: COR413-PM1, WCOR413, WCOR413-LIKE, ATCOR413-PM1, FL3-5A3, ATCYP19 \| cold regulated 413 plasma membrane 1 \| chr2:6950163-6951012 FORWARD LENGTH=197